Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   LDO91_RS16460 Genome accession   NZ_AP025149
Coordinates   3670222..3671208 (-) Length   328 a.a.
NCBI ID   WP_126607373.1    Uniprot ID   A0AAV5NUA8
Organism   Vibrio penaeicida strain IFO 15642     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3665222..3676208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO91_RS16445 - 3665889..3666506 (-) 618 WP_126607285.1 DUF1449 family protein -
  LDO91_RS16450 mutS 3666911..3669442 (+) 2532 WP_126607375.1 DNA mismatch repair protein MutS -
  LDO91_RS16455 - 3669513..3670031 (-) 519 WP_126607374.1 hypothetical protein -
  LDO91_RS16460 rpoS 3670222..3671208 (-) 987 WP_126607373.1 RNA polymerase sigma factor RpoS Regulator
  LDO91_RS16465 - 3671268..3672200 (-) 933 WP_126607372.1 peptidoglycan DD-metalloendopeptidase family protein -
  LDO91_RS16470 - 3672211..3672837 (-) 627 WP_101112509.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  LDO91_RS16475 surE 3672838..3673584 (-) 747 WP_126607371.1 5'/3'-nucleotidase SurE -
  LDO91_RS16480 truD 3673883..3674935 (-) 1053 WP_126606189.1 tRNA pseudouridine(13) synthase TruD -
  LDO91_RS16485 ispF 3674939..3675415 (-) 477 WP_104401358.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LDO91_RS16490 ispD 3675426..3676151 (-) 726 WP_126606190.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37657.75 Da        Isoelectric Point: 4.6996

>NTDB_id=90049 LDO91_RS16460 WP_126607373.1 3670222..3671208(-) (rpoS) [Vibrio penaeicida strain IFO 15642]
MSISNAVTKVEEEFEVEAVAMEQPSAETRALTPEKQSEQKEDFEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDINNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide


Download         Length: 987 bp        

>NTDB_id=90049 LDO91_RS16460 WP_126607373.1 3670222..3671208(-) (rpoS) [Vibrio penaeicida strain IFO 15642]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGAAGTTGAAGCGGTTGCAATGGAACAACCTTCCGCAGA
AACAAGAGCTCTGACACCTGAAAAACAATCTGAGCAAAAAGAAGACTTTGAAGTCACGTCGAAAAGCTTAGATGCCACTC
AACTTTACCTAGGAGAGATTGGTTTTTCTCCACTGCTTACGGCCGAAGAAGAAGTTTTGTATGCGCGTCGCGCACTTCGC
GGTGACGAAGCTGCCCGCAAACGAATGATCGAAAGTAACCTGCGATTAGTTGTGAAAATTTCACGCCGTTACGGTAACCG
TGGTCTTGCGCTACTCGATCTTATCGAAGAGGGTAATTTAGGTTTAATCCGTGCAGTAGAGAAATTTGATCCAGAGAGAG
GTTTCCGATTCTCAACTTACGCAACTTGGTGGATCCGTCAAACCATTGAACGGGCGTTGATGAATCAAACAAGAACCATC
CGACTGCCTATTCACGTAGTAAAAGAGCTGAATATTTATCTCAGAACAGCTCGAGAGCTTTCTCAGAAGCTTGATCACGA
ACCGACGGCTGAAGAAATCGCACAAAAACTTGATAAACCTGTTGATGACGTGAGTAAGATGCTTCGTCTTAACGAGAGAG
TCAGTTCTGTGGATACGCCAATTGGCGGTGAAAGTGAAAAAGCACTACTCGACATCATTCCAGACATCAATAACTCTGAT
CCTGAAGTTTGTACGCAGGATGACGATATAAAACATTCTTTAATTGACTGGCTTGATGACCTGAATCCTAAGCAGAAAGA
AGTGCTTGCACGACGTTTTGGTCTTCTTGGCTATGAACCATCCACTTTGGAAGAAGTGGGACGAGAAATCAATCTAACTC
GTGAGCGCGTTCGTCAGATCCAAGTAGAAGGGCTTCGCCGCTTAAGAGAGATCTTAGTGAAACAAGGTCTGAACATGGAA
TCGCTATTTAATGTCGAAAACGACTAG

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(169-242)

Sigma-70 region 2 (Sigma70_r2)

(89-158)

Sigma-70, region 4 (Sigma70_r4)

(257-310)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(51-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

82.635

100

0.841

Multiple sequence alignment