Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   R2H34_RS01165 Genome accession   NZ_CP137746
Coordinates   247606..248757 (-) Length   383 a.a.
NCBI ID   WP_004905510.1    Uniprot ID   S7XRZ8
Organism   Acinetobacter sp. 16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 242606..253757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS01145 - 243778..244443 (+) 666 WP_171488079.1 TetR/AcrR family transcriptional regulator -
  R2H34_RS01150 - 244547..245419 (+) 873 WP_087540627.1 DMT family transporter -
  R2H34_RS01155 - 245862..246431 (-) 570 WP_042892180.1 Sua5/YciO/YrdC/YwlC family protein -
  R2H34_RS01160 dprA 246469..247596 (-) 1128 WP_075695884.1 DNA-processing protein DprA Machinery gene
  R2H34_RS01165 tsaP 247606..248757 (-) 1152 WP_004905510.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  R2H34_RS01170 def 248878..249408 (+) 531 WP_004905508.1 peptide deformylase -
  R2H34_RS01175 - 249430..249867 (+) 438 WP_004967052.1 DUF2946 family protein -
  R2H34_RS01180 - 249941..252037 (+) 2097 WP_075695883.1 TonB-dependent copper receptor -
  R2H34_RS01185 - 252084..252845 (-) 762 WP_004956542.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41829.95 Da        Isoelectric Point: 9.0745

>NTDB_id=900484 R2H34_RS01165 WP_004905510.1 247606..248757(-) (tsaP) [Acinetobacter sp. 16]
MKKVLNGIHSFHALGLKKQLIAVAICAGLGMTVNITHAASPNVSPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGGGTTLRPQVRIEALNNSVPVIPLAHIQQWLER
SSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGQRYGVYREGEPYIVVDEQGKKQNLGVELLQVASGVAVRN
ENDITTVELTDSYNGEVRRGDRVMLEQEAMLPTLFYPIDAKQVRDGGKVIRVLGSIGTAAKNGVVTVDRGTADGVEIGQV
FSTYQEGEIVQDPKTKEKVKLPGQYVGSLMIFKSFDRISYAYVLESELPIKVGSNIQPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=900484 R2H34_RS01165 WP_004905510.1 247606..248757(-) (tsaP) [Acinetobacter sp. 16]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGTTGCCATCTGTGC
AGGATTAGGCATGACGGTAAATATAACGCATGCAGCAAGCCCTAATGTTAGCCCACCCTCTGTTAAAGCTGGGGCACCAC
ATGTCTATGTAGTGAAAAAAGGCGATACCCTTTGGGATATCTCAGGCAAGTTTTTAAGTAAACCATGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACACGTTAAGAATCCTCACTGGATTTATCCAGGTGACCGCTTACTACTCTGTAGTTTGAATGG
CAAACCGTTAATCGGTAAAGATGAAGGTGATGGCTGTGACGGTATTATTCGTCGTTATACAGGTGGTGGAACAACTTTAC
GTCCGCAAGTACGTATCGAAGCATTGAACAATAGTGTGCCAGTTATTCCATTGGCTCATATTCAACAATGGTTAGAACGT
AGTTCAGTATTACCAGCGGATGCGATTGCGAATACCCCTTATATCTTAGGCACAGCTGACAATCGCGTGCTTGCAGGCAA
AGGACAAAGTGTTTACGTCCGTGGTCAAGGTCTAGAAAATGGTCAGCGTTATGGCGTTTACCGTGAAGGTGAACCTTACA
TCGTTGTTGATGAGCAAGGCAAAAAGCAAAACCTAGGTGTTGAATTACTTCAAGTCGCATCTGGTGTTGCTGTGCGCAAT
GAAAACGACATTACTACGGTTGAACTGACTGATAGCTATAACGGCGAAGTTCGTCGTGGTGATCGCGTGATGCTTGAACA
AGAGGCAATGTTGCCAACCTTGTTCTATCCTATCGATGCAAAACAAGTACGCGATGGCGGTAAAGTGATTCGTGTATTAG
GATCGATTGGTACAGCCGCAAAAAATGGTGTTGTCACTGTTGATCGTGGTACTGCTGATGGCGTTGAAATTGGTCAAGTC
TTTAGCACCTACCAAGAGGGTGAGATCGTACAAGATCCAAAAACTAAAGAGAAAGTTAAATTACCTGGACAATATGTGGG
TAGCTTGATGATCTTCAAGAGTTTTGATCGTATCAGCTATGCCTACGTTTTAGAAAGTGAACTACCAATCAAGGTCGGTT
CAAACATCCAACCACCACGCTTGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7XRZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.917

100

0.731