Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RQP19_RS12050 Genome accession   NZ_CP137742
Coordinates   2734502..2736352 (+) Length   616 a.a.
NCBI ID   WP_017426912.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain PJH16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2729502..2741352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP19_RS12025 (RQP19_12025) - 2729720..2731393 (+) 1674 WP_277376395.1 RICIN domain-containing protein -
  RQP19_RS12030 (RQP19_12030) - 2731590..2731766 (+) 177 WP_016818803.1 hypothetical protein -
  RQP19_RS12035 (RQP19_12035) - 2732007..2732141 (-) 135 WP_285695592.1 hypothetical protein -
  RQP19_RS12040 (RQP19_12040) - 2732259..2732666 (+) 408 WP_045245283.1 MarR family winged helix-turn-helix transcriptional regulator -
  RQP19_RS12045 (RQP19_12045) rcrP 2732746..2734515 (+) 1770 WP_318301107.1 ABC transporter ATP-binding protein Regulator
  RQP19_RS12050 (RQP19_12050) rcrQ 2734502..2736352 (+) 1851 WP_017426912.1 ABC transporter ATP-binding protein Regulator
  RQP19_RS12055 (RQP19_12055) - 2736560..2737327 (+) 768 WP_045245285.1 IclR family transcriptional regulator -
  RQP19_RS12060 (RQP19_12060) - 2737514..2738203 (+) 690 WP_045245286.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68244.16 Da        Isoelectric Point: 6.8584

>NTDB_id=900432 RQP19_RS12050 WP_017426912.1 2734502..2736352(+) (rcrQ) [Paenibacillus polymyxa strain PJH16]
MDKNEHTVGSKHIEMKQRGPIGRGHTEGMGTGKKANDFKKNIRQLLSYIKAYMPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDVNAVQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELVDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSKEHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKNGFYADLYNSQFEHVS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=900432 RQP19_RS12050 WP_017426912.1 2734502..2736352(+) (rcrQ) [Paenibacillus polymyxa strain PJH16]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGCACATCGAAATGAAACAGCGAGGTCCCATAGGTAGAGGTCATACGGA
AGGGATGGGAACTGGTAAAAAAGCGAATGATTTTAAAAAGAACATTCGCCAGCTCTTATCCTACATCAAGGCCTATATGC
CTATGATCATACTCTCAATGGTGCTGGCGCTGGCCGGTTCCGTCTTCAACGTGATTGGTCCAGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGATTGATGTGAATGCTGTTCAGAAGATTGTTCTTGTATTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTTAGCCGT
GTGACCAATGATGTCGATACGATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTATATACGAACTGGATCATGACCATTACTGGGATTGTAGCTACGCTGATCGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCAGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGGCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAAGAAGTGTTTCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTTGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATCGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCTTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCAGCTGC
TAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGTGGATGAGAGCGACAAGACCATGAAGCTGGATAACGCCA
AAGGGGATGTCGAATTTAAGCATGTCCGTTTCGGTTATAATGAAGACCATATGATTATCAAAGATTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGCCCTACAGGTGCCGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GCATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCATAGCTTCCTTAAAACTTTACCGCAGGGTTATGATACAGTGCT
AGACGACAAAGCTAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCCATGC
TCATTCTGGACGAGGCCACAAGTTCGGTCGATACGCGTACGGAGTTACTGATTCAACAAGCGATGGACCGACTTACTGTT
GGGAAAACCTCCTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTTATGAAGGACGGTAA
CATTATTGAAACGGGTAATCATGAGGAATTGCTAGGTAAAAACGGATTCTATGCCGATTTATACAACAGCCAGTTTGAAC
ATGTATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.979

93.669

0.524