Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RQP19_RS12045 Genome accession   NZ_CP137742
Coordinates   2732746..2734515 (+) Length   589 a.a.
NCBI ID   WP_318301107.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain PJH16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2727746..2739515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP19_RS12020 (RQP19_12020) - 2728426..2729175 (-) 750 WP_277376394.1 LysR family transcriptional regulator -
  RQP19_RS25220 - 2729159..2729332 (+) 174 WP_354005623.1 epoxide hydrolase N-terminal domain-containing protein -
  RQP19_RS12025 (RQP19_12025) - 2729720..2731393 (+) 1674 WP_277376395.1 RICIN domain-containing protein -
  RQP19_RS12030 (RQP19_12030) - 2731590..2731766 (+) 177 WP_016818803.1 hypothetical protein -
  RQP19_RS12035 (RQP19_12035) - 2732007..2732141 (-) 135 WP_285695592.1 hypothetical protein -
  RQP19_RS12040 (RQP19_12040) - 2732259..2732666 (+) 408 WP_045245283.1 MarR family winged helix-turn-helix transcriptional regulator -
  RQP19_RS12045 (RQP19_12045) rcrP 2732746..2734515 (+) 1770 WP_318301107.1 ABC transporter ATP-binding protein Regulator
  RQP19_RS12050 (RQP19_12050) rcrQ 2734502..2736352 (+) 1851 WP_017426912.1 ABC transporter ATP-binding protein Regulator
  RQP19_RS12055 (RQP19_12055) - 2736560..2737327 (+) 768 WP_045245285.1 IclR family transcriptional regulator -
  RQP19_RS12060 (RQP19_12060) - 2737514..2738203 (+) 690 WP_045245286.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65156.48 Da        Isoelectric Point: 7.1080

>NTDB_id=900431 RQP19_RS12045 WP_318301107.1 2732746..2734515(+) (rcrP) [Paenibacillus polymyxa strain PJH16]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANTELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGTAVPDRISLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKTAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYVFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDHGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=900431 RQP19_RS12045 WP_318301107.1 2732746..2734515(+) (rcrP) [Paenibacillus polymyxa strain PJH16]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGTTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACTGCAGGAACGCCGATGTCGGAAC
TGCTGATTCCTGGTATTTATATGCTGTTATGTGCTGTCGGGAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGCCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGTTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATCGCAGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGACGGGGCTTCGCGTAGTGCGTGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTTGGGCAGGCCAATACCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGATTGGCGCTTACCTGATTAACGGAAC
GGCCGTGCCGGACCGCATTTCGCTATTCTCTAATATGGTCGTATTCTCATCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCATTGACGGGCATGAAACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTTAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGTAAAACCAGCGTAATCAATCTGATTTCTCGTTTCTACGATGTGACTGAGGGAGAGGTGCTCGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAACAGCCGTGG
AGATTGCCCAAGGCACGGAGTTTGTCGAAAAAATGGACGGTCAGTATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATGTCTTCGATGATTCCTT
CTCGGCATTGGACTACAGAACGGACCGGATTCTGCGCTCGGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATCGTTCTGGACCACGGCGAGATTGTAGGGAACGGCACA
CACGAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.833

100

0.528