Detailed information NTG0090036

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LDO91_RS09505
• Genome accession: NZ_AP025149
• Coordinates: 2141273..2142697 (+)
• Length: 474 a.a.
• NCBI ID: WP_126609466.1
• Uniprot ID: -
• Organism: Vibrio penaeicida strain IFO 15642
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2136273..2147697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO91_RS09485	-	2137483..2138439 (+)	957	WP_126607134.1	5'-nucleotidase	-
LDO91_RS09495	-	2138588..2139301 (+)	714	WP_224055095.1	hypothetical protein	-
LDO91_RS09500	-	2139443..2140717 (+)	1275	WP_224055096.1	magnesium transporter MgtE N-terminal domain-containing protein	-
LDO91_RS09505	sbcB	2141273..2142697 (+)	1425	WP_126609466.1	exodeoxyribonuclease I	Machinery gene
LDO91_RS09510	-	2142711..2143073 (+)	363	WP_101115362.1	CidA/LrgA family protein	-
LDO91_RS09515	-	2143073..2143747 (+)	675	WP_101115406.1	LrgB family protein	-
LDO91_RS09520	cdd	2144071..2144958 (+)	888	WP_126609467.1	cytidine deaminase	-
LDO91_RS09525	purT	2145106..2146281 (+)	1176	WP_126609468.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
LDO91_RS09530	-	2146397..2146906 (+)	510	WP_126607613.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54642.92 Da
• Isoelectric Point: 5.0169

>NTDB_id=90036 LDO91_RS09505 WP_126609466.1 2141273..2142697(+) (sbcB) [Vibrio penaeicida strain IFO 15642]
MPQDNQPSLFFFDYETWGTSPAKDRPSQFAGVRTDMDLNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAVSKGLPEP
EFIRKIHDELSTPNTTSLGYNSIRFDDEVSRYTLYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGVNWPKREDGHT
SFKLEHLSVENGIEHENAHDAMADVIATIEMARKVKEAQPKLFDYLFSMRHKRKLNELVDIVNMTPLMHVSGMFGAECAY
TSWVVPLAWHPTNQNAVAMVNLAMDPTPLIELSSDELRTRLYTRRDQLEEGQLPVPVKLVHLNKCPVLAPAKTLTAENAQ
FIGIDREQCLKNLALIKQHPEIREKLIELYQNKDEYDVDPNVDTQLYNGFFSPVDKATMDIIREKAPEQLAGMEINVKDE
RIAPLLFRYRARHYPWTLDESEQAKWAAHCRDYFESNLPDYMQNLENLVHEHDGDERKVSLLKSVYQYVEKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=90036 LDO91_RS09505 WP_126609466.1 2141273..2142697(+) (sbcB) [Vibrio penaeicida strain IFO 15642]
ATGCCTCAAGATAATCAGCCCTCTCTGTTTTTCTTCGATTACGAAACCTGGGGAACCAGTCCAGCCAAAGATCGACCAAG
TCAATTTGCAGGCGTAAGAACGGATATGGATCTCAATATCATTGGCGAGCCTTTGGTTATTTACTGCCAACCGCCCTCTG
ATTACCTCCCCTCTCCAGAAGCGGCGCTTATTACCGGCATCACTCCACAAACAGCAGTGTCTAAAGGGCTTCCTGAACCT
GAATTTATACGAAAAATTCATGATGAGCTCTCTACTCCAAACACAACGAGCCTTGGCTACAACAGCATTCGATTTGATGA
TGAAGTTTCTAGGTACACTCTTTACCGGAATTTCTTCGACCCTTACGCATGGAGTTGGCAAAATGGTAACTCTCGTTGGG
ATTTGCTCGATGTGATGCGTGCTTGCCATGCCCTTAGACCGGAAGGCGTCAATTGGCCAAAGCGTGAAGATGGGCACACC
AGCTTTAAACTGGAGCATTTGTCTGTCGAAAATGGGATAGAACACGAAAATGCCCACGATGCGATGGCAGATGTTATCGC
AACCATTGAAATGGCGAGAAAAGTTAAGGAAGCGCAACCTAAGCTGTTTGATTACCTCTTTAGCATGCGCCACAAACGCA
AACTCAATGAGTTGGTCGACATCGTCAACATGACACCGCTAATGCATGTTTCTGGCATGTTTGGGGCAGAATGCGCTTAT
ACCTCTTGGGTTGTTCCTTTGGCTTGGCACCCAACCAACCAAAACGCCGTGGCAATGGTTAACCTTGCCATGGACCCTAC
CCCACTTATTGAACTCAGTTCCGATGAATTAAGAACAAGGCTATACACACGCCGAGATCAACTGGAAGAAGGGCAATTGC
CAGTTCCCGTTAAGCTTGTTCACCTAAATAAATGCCCTGTTCTCGCACCAGCGAAAACGTTAACGGCAGAAAATGCCCAA
TTTATCGGAATCGACAGAGAACAGTGCTTGAAAAATCTGGCACTCATTAAACAACACCCAGAAATTAGAGAAAAGCTTAT
CGAGCTATACCAGAACAAAGATGAGTACGATGTCGATCCAAACGTGGATACTCAGCTTTATAATGGGTTCTTTTCTCCGG
TAGACAAAGCCACCATGGACATCATTCGAGAAAAAGCCCCAGAGCAATTAGCGGGGATGGAAATCAATGTTAAAGATGAA
CGCATTGCCCCACTTCTGTTCCGTTATCGTGCTAGGCACTACCCATGGACGCTCGATGAATCAGAGCAAGCTAAATGGGC
TGCGCATTGTCGAGATTATTTCGAAAGTAATTTGCCCGACTACATGCAGAACCTTGAAAACTTAGTTCACGAACATGATG
GTGATGAAAGAAAGGTATCGCTGTTAAAATCCGTATATCAATACGTAGAAAAATTGGTCTCATAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	73.784	99.789	0.736