Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R8G65_RS07710 Genome accession   NZ_CP137729
Coordinates   1735914..1737278 (-) Length   454 a.a.
NCBI ID   WP_024742073.1    Uniprot ID   A0A2H1E6U4
Organism   Tenacibaculum maritimum strain TCFB 4574     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1730914..1742278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8G65_RS07685 (R8G65_07670) - 1731709..1732575 (-) 867 WP_271676369.1 M23 family metallopeptidase -
  R8G65_RS07690 (R8G65_07675) - 1732946..1733308 (-) 363 WP_024742069.1 hypothetical protein -
  R8G65_RS07695 (R8G65_07680) - 1733344..1733886 (-) 543 WP_271676370.1 carboxymuconolactone decarboxylase family protein -
  R8G65_RS07700 (R8G65_07685) - 1734117..1734968 (-) 852 WP_406772025.1 helix-turn-helix domain-containing protein -
  R8G65_RS07705 (R8G65_07690) - 1735216..1735842 (+) 627 WP_406772026.1 DUF6973 domain-containing protein -
  R8G65_RS07710 (R8G65_07695) radA 1735914..1737278 (-) 1365 WP_024742073.1 DNA repair protein RadA Machinery gene
  R8G65_RS07715 (R8G65_07700) - 1737336..1739747 (-) 2412 WP_406772027.1 helix-turn-helix domain-containing protein -
  R8G65_RS07720 (R8G65_07705) - 1739804..1740757 (-) 954 WP_406772028.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  R8G65_RS07725 (R8G65_07710) panD 1740760..1741110 (-) 351 WP_406772029.1 aspartate 1-decarboxylase -
  R8G65_RS07730 (R8G65_07715) panC 1741140..1742000 (-) 861 WP_406772030.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49729.18 Da        Isoelectric Point: 6.7652

>NTDB_id=900338 R8G65_RS07710 WP_024742073.1 1735914..1737278(-) (radA) [Tenacibaculum maritimum strain TCFB 4574]
MAKTKTTFFCQNCGTQHAKWVGQCGSCKEWNTIVEEVIQKEEKRNWKQATTAKKNNTKPLLVNEIQLNPEERISTNNNEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALQISQKVLYVSGEESQSQIKMRAERLEEASNSNCLILTETNTQQIFKN
IEEVVPDVLVIDSIQTLHTNIIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGHIAGPKILEHMVDVVLQFEG
DRNHTYRILRSQKNRFGSTAELGIYEMLSNGLREISNPSEILISKKDADLSGTAIASTLEGVRPLMIEIQALVSTAVYGT
PQRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNITGGIHVDDPAIDLAVVAAILSSNQDLAISPDVCFAAEVGLAGE
IRPVSKIDQRILEAEKLGYKTFVASKYNKITSKDHTIKLLLVGKIEEAFATLFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=900338 R8G65_RS07710 WP_024742073.1 1735914..1737278(-) (radA) [Tenacibaculum maritimum strain TCFB 4574]
ATGGCTAAAACTAAAACAACCTTTTTTTGTCAAAATTGTGGAACCCAACATGCAAAATGGGTGGGGCAATGTGGTTCTTG
TAAAGAATGGAACACTATTGTAGAAGAAGTTATTCAAAAAGAAGAAAAAAGGAACTGGAAGCAAGCAACAACAGCAAAAA
AAAATAATACGAAACCGTTATTAGTTAATGAAATTCAACTAAATCCAGAAGAAAGAATTTCAACAAATAATAATGAGTTA
GATACCGTTTTAGGAGGAGGTTTGGTAAAAGGATCTGTAACACTTTTAGGAGGTGAACCAGGTATTGGTAAGTCAACTTT
ACTGTTACAGGTAGCGTTGCAAATTAGTCAAAAAGTTTTATACGTTTCAGGAGAAGAAAGCCAATCGCAAATAAAAATGC
GAGCAGAAAGGCTAGAAGAAGCAAGTAATTCCAATTGCTTAATTTTAACAGAGACGAATACGCAGCAAATTTTTAAAAAT
ATAGAAGAGGTAGTTCCAGATGTATTGGTAATAGACTCTATTCAAACATTACATACCAATATCATAGAAGCTTCTCCGGG
AAGTATTTCTCAAATTCGTGAAACCTCAGCAGAACTAATAAAATTTGCAAAAGAAACAGCAACGCCAGTATTGTTAATAG
GGCACATTAATAAGGAAGGTCATATTGCTGGTCCAAAAATATTGGAGCATATGGTAGATGTTGTTTTGCAGTTTGAAGGA
GACAGGAATCATACATATCGAATTTTGCGTTCGCAAAAAAATAGATTTGGATCTACTGCCGAGTTAGGTATTTACGAAAT
GTTATCTAATGGGCTTAGAGAAATTTCCAATCCATCAGAAATACTAATTTCTAAAAAAGATGCAGATTTAAGTGGTACAG
CAATTGCTTCTACACTGGAAGGAGTTCGACCGTTGATGATAGAAATTCAGGCATTGGTAAGCACTGCAGTATATGGAACT
CCACAAAGATCAACAACAGGGTACAATCTAAAGAGGCTTCACATGATTTTAGCAGTTTTAGAAAAACGAGCAGGGTTCAA
GTTAGGAGCAAAAGATGTCTTTTTAAATATTACAGGGGGGATTCATGTAGATGATCCCGCGATTGATCTTGCTGTTGTTG
CTGCAATTTTATCTTCAAATCAAGACCTAGCTATAAGTCCAGACGTATGCTTTGCAGCAGAAGTGGGATTGGCTGGAGAA
ATAAGGCCCGTGTCCAAAATAGATCAACGAATTTTAGAGGCTGAAAAACTTGGTTATAAAACTTTTGTAGCTTCTAAGTA
CAATAAGATTACTTCAAAAGATCATACAATAAAGTTACTATTGGTAGGGAAGATAGAGGAGGCTTTTGCTACATTATTTG
CTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(332-428)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H1E6U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.253

100

0.487
  radA Streptococcus pneumoniae R6

48.253

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.253

100

0.487
  radA Streptococcus mitis NCTC 12261

48.253

100

0.487
  radA Streptococcus pneumoniae D39

48.253

100

0.487
  radA Streptococcus mitis SK321

48.035

100

0.485
  radA Bacillus subtilis subsp. subtilis str. 168

47.692

100

0.478