Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R6I16_RS10775 Genome accession   NZ_CP137718
Coordinates   2238248..2238877 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate FELIX_MS772     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2233248..2243877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I16_RS10755 (R6I16_10755) ycbZ 2233649..2235409 (-) 1761 WP_000156518.1 AAA family ATPase -
  R6I16_RS10760 (R6I16_10760) matP 2235595..2236047 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  R6I16_RS10765 (R6I16_10765) ompA 2236123..2237163 (-) 1041 WP_000750416.1 porin OmpA -
  R6I16_RS10770 (R6I16_10770) sulA 2237520..2238029 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  R6I16_RS10775 (R6I16_10775) sxy/tfoX 2238248..2238877 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R6I16_RS10780 (R6I16_10780) yccS 2238840..2241002 (-) 2163 WP_000875061.1 YccS family putative transporter -
  R6I16_RS10785 (R6I16_10785) yccF 2241012..2241458 (-) 447 WP_001261235.1 YccF domain-containing protein -
  R6I16_RS10790 (R6I16_10790) helD 2241581..2243635 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=900324 R6I16_RS10775 WP_000839153.1 2238248..2238877(+) (sxy/tfoX) [Escherichia coli isolate FELIX_MS772]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=900324 R6I16_RS10775 WP_000839153.1 2238248..2238877(+) (sxy/tfoX) [Escherichia coli isolate FELIX_MS772]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1