Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LDO90_RS24275 Genome accession   NZ_AP025148
Coordinates   1179117..1180289 (+) Length   390 a.a.
NCBI ID   WP_126609826.1    Uniprot ID   A0AAV5NK45
Organism   Vibrio penaeicida strain IFO 15641     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174117..1185289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO90_RS24260 - 1175409..1176200 (+) 792 WP_185829936.1 EAL domain-containing protein -
  LDO90_RS24265 - 1176237..1177241 (-) 1005 WP_126609827.1 GTP-binding protein -
  LDO90_RS24270 - 1177949..1178896 (+) 948 WP_126609833.1 TDT family transporter -
  LDO90_RS24275 cqsA 1179117..1180289 (+) 1173 WP_126609826.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LDO90_RS24280 - 1180485..1182539 (-) 2055 WP_185829934.1 hybrid sensor histidine kinase/response regulator -
  LDO90_RS24285 - 1183119..1184312 (-) 1194 WP_126608197.1 acetate/propionate family kinase -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43123.97 Da        Isoelectric Point: 6.5462

>NTDB_id=90023 LDO90_RS24275 WP_126609826.1 1179117..1180289(+) (cqsA) [Vibrio penaeicida strain IFO 15641]
MSNFTAKPLPSFIENKLETYLEKHIYSRNNGKHIVQGLQPSDDSIVLRSNDYLAICNHDYIKARQINALSNATREPIMSA
VFQSQTVDESSFEQKFADFLGFDHCIITQSGWAANVGLLQTIADQDTHVYIDFFAHMSLWHGAQNAGSKIHPFLHNKPKN
LLKQVKKYGPGIVVIDSVYSTHGTVAPLKEFVEVANEQGCAIIVDESHSIGTHGPDGAGLLSELGLTDKVDFVTTSLAKT
FSYRAGAILCHHKVHECLPFISLPAIFSSGIIPYEMEALKATLELIKKSDHRREDLFNKSHKLISGLKSLDIRTDSNSQI
VAIETGTEENTERVRDFFEFNGIFGAVFCSPATPKNKSVIRLSVNSEVSDAQLDKVLTVCSLAKEQGLLS

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=90023 LDO90_RS24275 WP_126609826.1 1179117..1180289(+) (cqsA) [Vibrio penaeicida strain IFO 15641]
ATGAGTAATTTTACCGCTAAACCACTGCCGTCTTTTATTGAGAATAAACTCGAGACATATCTCGAAAAGCACATCTATTC
CAGAAATAACGGTAAACACATAGTACAAGGCTTACAACCTAGCGACGATTCGATAGTACTCAGAAGCAACGATTATTTGG
CCATATGCAATCACGATTACATTAAGGCTCGGCAAATCAACGCATTGAGCAATGCGACTCGCGAACCCATCATGTCTGCT
GTATTCCAAAGCCAAACGGTAGATGAAAGCTCTTTTGAACAGAAATTTGCAGATTTCCTAGGGTTTGACCATTGCATTAT
CACTCAGTCTGGGTGGGCTGCGAACGTTGGTTTACTTCAAACGATTGCCGACCAAGATACCCATGTTTACATTGATTTTT
TTGCCCATATGTCTTTATGGCACGGGGCGCAGAATGCCGGTAGCAAAATTCACCCTTTCCTTCACAACAAGCCAAAGAAT
TTACTTAAACAAGTAAAGAAATACGGCCCAGGTATCGTGGTTATTGACTCGGTATACAGTACGCACGGAACCGTTGCGCC
GCTTAAGGAATTCGTTGAGGTAGCAAATGAGCAAGGCTGCGCCATCATTGTCGATGAATCTCACTCGATTGGAACACACG
GTCCAGACGGCGCTGGCTTGCTCTCTGAGCTTGGTTTAACTGATAAGGTGGACTTTGTAACAACCAGCCTAGCTAAGACG
TTCTCCTACCGCGCAGGAGCAATCTTGTGCCATCACAAGGTACATGAATGTCTACCTTTTATCTCGTTACCCGCAATTTT
TAGCTCAGGCATTATTCCTTATGAAATGGAAGCACTAAAAGCAACATTAGAGCTCATTAAAAAGAGTGACCATCGACGAG
AGGATTTATTCAATAAATCTCATAAACTTATTTCAGGATTGAAATCCTTAGATATACGGACAGACAGCAACTCACAAATT
GTTGCAATAGAAACAGGAACCGAGGAGAACACAGAAAGAGTACGTGATTTCTTTGAATTTAACGGAATTTTTGGTGCGGT
ATTTTGTAGCCCTGCAACACCAAAAAATAAAAGTGTTATTCGTCTATCTGTAAATAGTGAAGTGAGTGATGCACAATTAG
ACAAAGTATTGACTGTTTGCAGTTTAGCTAAAGAGCAAGGTTTGTTATCTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.236

97.949

0.541

Multiple sequence alignment