Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ABGV14_RS17585 Genome accession   NZ_CP156813
Coordinates   3592816..3594063 (-) Length   415 a.a.
NCBI ID   WP_001153644.1    Uniprot ID   -
Organism   Escherichia coli strain PKF8     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3587816..3599063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGV14_RS17570 - 3588573..3589270 (+) 698 WP_223411729.1 IS1 family transposase -
  ABGV14_RS17575 - 3589414..3591699 (+) 2286 WP_353939810.1 hypothetical protein -
  ABGV14_RS17580 - 3591696..3592325 (+) 630 WP_000657788.1 CatB-related O-acetyltransferase -
  ABGV14_RS17585 kpsS 3592816..3594063 (-) 1248 WP_001153644.1 capsular biosynthesis protein Regulator
  ABGV14_RS17590 - 3594098..3596125 (-) 2028 WP_046076871.1 capsular polysaccharide biosynthesis protein -
  ABGV14_RS17595 kdsB 3596122..3596862 (-) 741 WP_000030753.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABGV14_RS17600 - 3596872..3598548 (-) 1677 WP_001325876.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49568.22 Da        Isoelectric Point: 10.0935

>NTDB_id=900227 ABGV14_RS17585 WP_001153644.1 3592816..3594063(-) (kpsS) [Escherichia coli strain PKF8]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRREFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNWVYYGDVKKGLEWIV
RTDFSYIKNNTIQSS

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=900227 ABGV14_RS17585 WP_001153644.1 3592816..3594063(-) (kpsS) [Escherichia coli strain PKF8]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTTTTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCTGGTTGGTTGCGAGATCTCCACCGACAATATGAC
TTTGACACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGGTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGACCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCGTGAGTTTCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGATTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGATATTTATTGGTGAAGACACAGGTTAATTGGGTTTATTATGGGGATGTAAAGAAAGGGTTAGAATGGATTGTA
AGGACAGATTTTTCTTACATTAAAAATAATACGATACAATCATCGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

94.217

0.373