Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   R6I04_RS23600 Genome accession   NZ_CP137714
Coordinates   5097150..5097707 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate FELIX_MS457     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5092150..5102707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I04_RS23580 pilR 5093426..5094763 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  R6I04_RS23585 thiO 5094809..5095903 (-) 1095 WP_010895678.1 glycine oxidase ThiO -
  R6I04_RS23590 - 5096038..5096547 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  R6I04_RS23595 - 5096653..5097159 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  R6I04_RS23600 pilV 5097150..5097707 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  R6I04_RS23605 pilW 5097704..5098528 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  R6I04_RS23610 pilX 5098525..5099112 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  R6I04_RS23615 pilY1 5099124..5102609 (+) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=900212 R6I04_RS23600 WP_003119423.1 5097150..5097707(+) (pilV) [Pseudomonas aeruginosa isolate FELIX_MS457]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=900212 R6I04_RS23600 WP_003119423.1 5097150..5097707(+) (pilV) [Pseudomonas aeruginosa isolate FELIX_MS457]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995