Detailed information NTG0900200

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABGV14_RS12820
• Genome accession: NZ_CP156813
• Coordinates: 2623374..2624399 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain PKF8
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2618374..2629399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABGV14_RS12800	metJ	2619435..2619752 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
ABGV14_RS12805	yiiX	2619936..2620544 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
ABGV14_RS12810	rpmE	2620605..2620817 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ABGV14_RS12815	priA	2621020..2623218 (+)	2199	WP_353939794.1	primosomal protein N'	Machinery gene
ABGV14_RS12820	cytR	2623374..2624399 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ABGV14_RS12825	ftsN	2624491..2625450 (+)	960	WP_000068828.1	cell division protein FtsN	-
ABGV14_RS12830	hslV	2625543..2626073 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABGV14_RS12835	hslU	2626083..2627414 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ABGV14_RS12840	menA	2627481..2628407 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABGV14_RS12845	rraA	2628500..2628985 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABGV14_RS12850	zapB	2629070..2629315 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=900200 ABGV14_RS12820 WP_000644904.1 2623374..2624399(+) (cytR) [Escherichia coli strain PKF8]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=900200 ABGV14_RS12820 WP_000644904.1 2623374..2624399(+) (cytR) [Escherichia coli strain PKF8]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628