Detailed information NTG0900156

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: R6I06_RS20115
• Genome accession: NZ_CP137711
• Coordinates: 3817378..3818523 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis isolate FELIX_MS886
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3812378..3823523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6I06_RS20090 (R6I06_20090)	albF	3812394..3813674 (+)	1281	WP_003242974.1	M16 family metallopeptidase	-
R6I06_RS20095 (R6I06_20095)	albG	3813671..3814372 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
R6I06_RS20100 (R6I06_20100)	ywhL	3814378..3815754 (-)	1377	WP_003244415.1	YncE family protein	-
R6I06_RS20105 (R6I06_20105)	ywhK	3815793..3817148 (-)	1356	WP_003227552.1	YncE family protein	-
R6I06_RS20110 (R6I06_20110)	-	3817145..3817375 (-)	231	WP_009968328.1	hypothetical protein	-
R6I06_RS20115 (R6I06_20115)	rapF	3817378..3818523 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
R6I06_RS20120 (R6I06_20120)	phrF	3818507..3818626 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
R6I06_RS20125 (R6I06_20125)	ywhH	3818725..3819198 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
R6I06_RS20130 (R6I06_20130)	speB	3819230..3820102 (-)	873	WP_003227545.1	agmatinase	-
R6I06_RS20135 (R6I06_20135)	speE	3820163..3820993 (-)	831	WP_003227543.1	spermidine synthase	-
R6I06_RS20140 (R6I06_20140)	pbpG	3821195..3823270 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=900156 R6I06_RS20115 WP_003227549.1 3817378..3818523(+) (rapF) [Bacillus subtilis isolate FELIX_MS886]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=900156 R6I06_RS20115 WP_003227549.1 3817378..3818523(+) (rapF) [Bacillus subtilis isolate FELIX_MS886]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572