Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   R6I06_RS19060 Genome accession   NZ_CP137711
Coordinates   3615995..3616684 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3610995..3621684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS19025 (R6I06_19025) flgN 3611175..3611657 (-) 483 WP_003227999.1 flagellar protein FlgN -
  R6I06_RS19030 (R6I06_19030) flgM 3611673..3611939 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  R6I06_RS19035 (R6I06_19035) yvyF 3612020..3612439 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  R6I06_RS19040 (R6I06_19040) comFC 3612513..3613235 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  R6I06_RS19045 (R6I06_19045) comFB 3613199..3613495 (-) 297 WP_003227989.1 late competence protein ComFB -
  R6I06_RS19050 (R6I06_19050) comFA 3613555..3614946 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  R6I06_RS19055 (R6I06_19055) fakBA 3615052..3615897 (-) 846 WP_003244125.1 DegV family protein -
  R6I06_RS19060 (R6I06_19060) degU 3615995..3616684 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  R6I06_RS19065 (R6I06_19065) degS 3616767..3617924 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  R6I06_RS19070 (R6I06_19070) yvyE 3618141..3618794 (+) 654 WP_003227979.1 YigZ family protein -
  R6I06_RS19075 (R6I06_19075) tagV 3618794..3619969 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  R6I06_RS19080 (R6I06_19080) tagO 3620042..3621118 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=900151 R6I06_RS19060 WP_003219701.1 3615995..3616684(-) (degU) [Bacillus subtilis isolate FELIX_MS886]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=900151 R6I06_RS19060 WP_003219701.1 3615995..3616684(-) (degU) [Bacillus subtilis isolate FELIX_MS886]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1