Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   R6I06_RS13050 Genome accession   NZ_CP137711
Coordinates   2489442..2490245 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2484442..2495245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS13025 (R6I06_13025) glpQB 2485588..2486319 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  R6I06_RS13030 (R6I06_13030) yqiI 2486398..2487018 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  R6I06_RS13035 (R6I06_13035) yqiH 2487033..2487326 (-) 294 WP_003230284.1 lipoprotein -
  R6I06_RS13040 (R6I06_13040) - 2487634..2487786 (+) 153 WP_003230276.1 hypothetical protein -
  R6I06_RS13045 (R6I06_13045) yqiG 2487859..2488977 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  R6I06_RS13050 (R6I06_13050) spo0A 2489442..2490245 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  R6I06_RS13055 (R6I06_13055) spoIVB 2490521..2491801 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  R6I06_RS13060 (R6I06_13060) recN 2491976..2493706 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  R6I06_RS13065 (R6I06_13065) argR 2493743..2494192 (-) 450 WP_003230265.1 arginine repressor ArgR -
  R6I06_RS13070 (R6I06_13070) yqxC 2494290..2495135 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=900120 R6I06_RS13050 WP_003226427.1 2489442..2490245(-) (spo0A) [Bacillus subtilis isolate FELIX_MS886]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=900120 R6I06_RS13050 WP_003226427.1 2489442..2490245(-) (spo0A) [Bacillus subtilis isolate FELIX_MS886]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1