Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   R6I06_RS07625 Genome accession   NZ_CP137711
Coordinates   1446039..1446503 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1441039..1451503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS07605 (R6I06_07605) kinA 1441505..1443325 (+) 1821 WP_003245779.1 sporulation histidine kinase KinA -
  R6I06_RS07610 (R6I06_07610) dapX 1443336..1444517 (-) 1182 WP_003232415.1 aminotransferase A -
  R6I06_RS07615 (R6I06_07615) - 1444719..1444880 (-) 162 WP_003245246.1 hypothetical protein -
  R6I06_RS07620 (R6I06_07620) cheV 1445084..1445995 (+) 912 WP_009967126.1 chemotaxis protein CheV -
  R6I06_RS07625 (R6I06_07625) kre 1446039..1446503 (-) 465 WP_003232406.1 YkyB family protein Regulator
  R6I06_RS07630 (R6I06_07630) ykuC 1446628..1447920 (-) 1293 WP_003245267.1 MFS transporter -
  R6I06_RS07635 (R6I06_07635) ltdD 1447996..1448490 (-) 495 WP_010886500.1 L,D-transpeptidase family protein -
  R6I06_RS07640 (R6I06_07640) ppeE 1448547..1449407 (-) 861 WP_003232400.1 metallophosphoesterase -
  R6I06_RS07645 (R6I06_07645) fadH 1449550..1450314 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=900112 R6I06_RS07625 WP_003232406.1 1446039..1446503(-) (kre) [Bacillus subtilis isolate FELIX_MS886]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=900112 R6I06_RS07625 WP_003232406.1 1446039..1446503(-) (kre) [Bacillus subtilis isolate FELIX_MS886]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1