Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R6I06_RS06250 Genome accession   NZ_CP137711
Coordinates   1201364..1202515 (+) Length   383 a.a.
NCBI ID   WP_003245839.1    Uniprot ID   A0AAE2VB70
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1196364..1207515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS06215 (R6I06_06215) yjbB 1197036..1198253 (+) 1218 WP_010886478.1 MFS transporter -
  R6I06_RS06220 (R6I06_06220) yjbC 1198417..1198995 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  R6I06_RS06225 (R6I06_06225) spx 1199176..1199571 (+) 396 WP_003245483.1 transcriptional regulator Spx -
  R6I06_RS06230 (R6I06_06230) yjbE 1199614..1200270 (-) 657 WP_003232944.1 TerC family protein -
  R6I06_RS06235 (R6I06_06235) - 1200440..1200580 (+) 141 WP_119122854.1 hypothetical protein -
  R6I06_RS06240 (R6I06_06240) mecA 1200547..1201203 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  R6I06_RS06245 (R6I06_06245) - 1201198..1201320 (-) 123 WP_003245684.1 hypothetical protein -
  R6I06_RS06250 (R6I06_06250) coiA 1201364..1202515 (+) 1152 WP_003245839.1 competence protein CoiA Machinery gene
  R6I06_RS06255 (R6I06_06255) pepF 1202745..1204574 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  R6I06_RS06260 (R6I06_06260) - 1204612..1204779 (-) 168 WP_003244944.1 hypothetical protein -
  R6I06_RS06265 (R6I06_06265) spxH 1205093..1205992 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  R6I06_RS06270 (R6I06_06270) bhbI 1205989..1206387 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  R6I06_RS06275 (R6I06_06275) cwlQ 1206642..1207376 (-) 735 WP_003245645.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 44755.85 Da        Isoelectric Point: 10.0034

>NTDB_id=900108 R6I06_RS06250 WP_003245839.1 1201364..1202515(+) (coiA) [Bacillus subtilis isolate FELIX_MS886]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCAIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSTF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRSECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=900108 R6I06_RS06250 WP_003245839.1 1201364..1202515(+) (coiA) [Bacillus subtilis isolate FELIX_MS886]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCGCCATAGACATCGAGCCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAACTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAACGACAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTCCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGAGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

100

97.389

0.974