Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   R6I06_RS01855 Genome accession   NZ_CP137711
Coordinates   343653..344102 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338653..349102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS01820 (R6I06_01820) yckA 338804..339484 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  R6I06_RS01825 (R6I06_01825) yckB 339494..340357 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  R6I06_RS01830 (R6I06_01830) - 340519..340716 (+) 198 WP_119122841.1 hypothetical protein -
  R6I06_RS01835 (R6I06_01835) yckC 340735..341190 (+) 456 WP_003246356.1 RDD family protein -
  R6I06_RS01840 (R6I06_01840) yckD 341272..341604 (+) 333 WP_003246247.1 YckD family protein -
  R6I06_RS01845 (R6I06_01845) bglC 341758..343191 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  R6I06_RS01850 (R6I06_01850) nin/comJ 343228..343626 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  R6I06_RS01855 (R6I06_01855) nucA/comI 343653..344102 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  R6I06_RS01860 (R6I06_01860) tlpC 344270..345991 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  R6I06_RS01865 (R6I06_01865) hxlB 346102..346659 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  R6I06_RS01870 (R6I06_01870) hxlA 346665..347297 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  R6I06_RS01875 (R6I06_01875) hxlR 347530..347892 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=900085 R6I06_RS01855 WP_003246436.1 343653..344102(-) (nucA/comI) [Bacillus subtilis isolate FELIX_MS886]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=900085 R6I06_RS01855 WP_003246436.1 343653..344102(-) (nucA/comI) [Bacillus subtilis isolate FELIX_MS886]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1