Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   LDO90_RS16690 Genome accession   NZ_AP025147
Coordinates   3718564..3719550 (-) Length   328 a.a.
NCBI ID   WP_126607373.1    Uniprot ID   A0AAV5NUA8
Organism   Vibrio penaeicida strain IFO 15641     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3713564..3724550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO90_RS16675 - 3714231..3714875 (-) 645 WP_224055258.1 DUF1449 domain-containing protein -
  LDO90_RS16680 mutS 3715253..3717784 (+) 2532 WP_126607375.1 DNA mismatch repair protein MutS -
  LDO90_RS16685 - 3717855..3718373 (-) 519 WP_126607374.1 hypothetical protein -
  LDO90_RS16690 rpoS 3718564..3719550 (-) 987 WP_126607373.1 RNA polymerase sigma factor RpoS Regulator
  LDO90_RS16695 - 3719610..3720542 (-) 933 WP_126607372.1 peptidoglycan DD-metalloendopeptidase family protein -
  LDO90_RS16700 - 3720553..3721179 (-) 627 WP_101112509.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  LDO90_RS16705 surE 3721180..3721926 (-) 747 WP_126607371.1 5'/3'-nucleotidase SurE -
  LDO90_RS16710 truD 3722225..3723277 (-) 1053 WP_126606189.1 tRNA pseudouridine(13) synthase TruD -
  LDO90_RS16715 ispF 3723281..3723757 (-) 477 WP_104401358.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LDO90_RS16720 ispD 3723768..3724493 (-) 726 WP_126606190.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37657.75 Da        Isoelectric Point: 4.6996

>NTDB_id=90007 LDO90_RS16690 WP_126607373.1 3718564..3719550(-) (rpoS) [Vibrio penaeicida strain IFO 15641]
MSISNAVTKVEEEFEVEAVAMEQPSAETRALTPEKQSEQKEDFEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDINNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide


Download         Length: 987 bp        

>NTDB_id=90007 LDO90_RS16690 WP_126607373.1 3718564..3719550(-) (rpoS) [Vibrio penaeicida strain IFO 15641]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGAAGTTGAAGCGGTTGCAATGGAACAACCTTCCGCAGA
AACAAGAGCTCTGACACCTGAAAAACAATCTGAGCAAAAAGAAGACTTTGAAGTCACGTCGAAAAGCTTAGATGCCACTC
AACTTTACCTAGGAGAGATTGGTTTTTCTCCACTGCTTACGGCCGAAGAAGAAGTTTTGTATGCGCGTCGCGCACTTCGC
GGTGACGAAGCTGCCCGCAAACGAATGATCGAAAGTAACCTGCGATTAGTTGTGAAAATTTCACGCCGTTACGGTAACCG
TGGTCTTGCGCTACTCGATCTTATCGAAGAGGGTAATTTAGGTTTAATCCGTGCAGTAGAGAAATTTGATCCAGAGAGAG
GTTTCCGATTCTCAACTTACGCAACTTGGTGGATCCGTCAAACCATTGAACGGGCGTTGATGAATCAAACAAGAACCATC
CGACTGCCTATTCACGTAGTAAAAGAGCTGAATATTTATCTCAGAACAGCTCGAGAGCTTTCTCAGAAGCTTGATCACGA
ACCGACGGCTGAAGAAATCGCACAAAAACTTGATAAACCTGTTGATGACGTGAGTAAGATGCTTCGTCTTAACGAGAGAG
TCAGTTCTGTGGATACGCCAATTGGCGGTGAAAGTGAAAAAGCACTACTCGACATCATTCCAGACATCAATAACTCTGAT
CCTGAAGTTTGTACGCAGGATGACGATATAAAACATTCTTTAATTGACTGGCTTGATGACCTGAATCCTAAGCAGAAAGA
AGTGCTTGCACGACGTTTTGGTCTTCTTGGCTATGAACCATCCACTTTGGAAGAAGTGGGACGAGAAATCAATCTAACTC
GTGAGCGCGTTCGTCAGATCCAAGTAGAAGGGCTTCGCCGCTTAAGAGAGATCTTAGTGAAACAAGGTCTGAACATGGAA
TCGCTATTTAATGTCGAAAACGACTAG

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(169-242)

Sigma-70 region 2 (Sigma70_r2)

(89-158)

Sigma-70, region 4 (Sigma70_r4)

(257-310)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(51-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

82.635

100

0.841

Multiple sequence alignment