Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDO90_RS16540 Genome accession   NZ_AP025147
Coordinates   3686277..3686795 (-) Length   172 a.a.
NCBI ID   WP_101112486.1    Uniprot ID   -
Organism   Vibrio penaeicida strain IFO 15641     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3681277..3691795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO90_RS16525 - 3682578..3683372 (+) 795 WP_126606896.1 inner membrane protein YpjD -
  LDO90_RS16530 - 3683472..3684737 (+) 1266 WP_101112484.1 HlyC/CorC family transporter -
  LDO90_RS16535 - 3684952..3686187 (+) 1236 WP_126606895.1 YbiU family protein -
  LDO90_RS16540 luxS 3686277..3686795 (-) 519 WP_101112486.1 S-ribosylhomocysteine lyase Regulator
  LDO90_RS16545 - 3686820..3687425 (-) 606 WP_101112487.1 hypothetical protein -
  LDO90_RS16550 gshA 3687431..3688999 (-) 1569 WP_126606894.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18862.66 Da        Isoelectric Point: 4.8281

>NTDB_id=90004 LDO90_RS16540 WP_101112486.1 3686277..3686795(-) (luxS) [Vibrio penaeicida strain IFO 15641]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGSNVEIIDISP
MGCRTGFYMSLIGTPTESQVAEAWLAAMKDVLKVESQNQIPELNEYQCGTADMHSLDEAKAIATAIIDAGIAVNKNDELA
LPESMLKELSIK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=90004 LDO90_RS16540 WP_101112486.1 3686277..3686795(-) (luxS) [Vibrio penaeicida strain IFO 15641]
ATGCCATTACTAGATAGTTTCACCGTTGATCACACTAAGATGAACGCTCCTGCGGTTCGCGTGGCGAAAACCATGCAGAC
GCCAAAAGGGGACACGATCACTGTGTTTGATTTGCGATTCACCGCGCCTAACAAAGACATCCTTTCAGAAAGAGGCATAC
ATACGTTAGAGCACCTTTATGCGGGTTTCATGCGTGCGCATTTGAATGGTTCTAATGTGGAAATTATCGATATTTCTCCA
ATGGGCTGTCGTACAGGTTTCTACATGAGTCTTATTGGCACGCCAACAGAATCTCAAGTAGCAGAAGCTTGGCTAGCAGC
AATGAAAGATGTGCTGAAGGTAGAGAGTCAAAATCAAATTCCAGAATTGAATGAATATCAGTGTGGGACTGCAGACATGC
ACTCTCTTGATGAAGCAAAAGCGATTGCGACTGCGATTATCGATGCTGGTATTGCTGTAAATAAAAACGATGAACTGGCG
TTGCCAGAGTCAATGTTAAAAGAACTTAGCATCAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment