Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R6I13_RS08630 Genome accession   NZ_CP137703
Coordinates   1819457..1820071 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii isolate FELIX_MS689     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814457..1825071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I13_RS08610 (R6I13_08610) - 1814828..1816588 (-) 1761 WP_003035878.1 Lon protease family protein -
  R6I13_RS08615 (R6I13_08615) matP 1816774..1817226 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  R6I13_RS08620 (R6I13_08620) ompA 1817314..1818372 (-) 1059 WP_003836839.1 porin OmpA -
  R6I13_RS08625 (R6I13_08625) sulA 1818730..1819239 (-) 510 WP_003836838.1 SOS-induced cell division inhibitor SulA -
  R6I13_RS08630 (R6I13_08630) sxy/tfoX 1819457..1820071 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  R6I13_RS08635 (R6I13_08635) yccS 1820049..1822202 (-) 2154 WP_032941200.1 YccS family putative transporter -
  R6I13_RS08640 (R6I13_08640) - 1822221..1822667 (-) 447 WP_003035892.1 YccF domain-containing protein -
  R6I13_RS08645 (R6I13_08645) helD 1822793..1824847 (+) 2055 WP_003836836.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=900017 R6I13_RS08630 WP_003035889.1 1819457..1820071(+) (sxy/tfoX) [Citrobacter freundii isolate FELIX_MS689]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=900017 R6I13_RS08630 WP_003035889.1 1819457..1820071(+) (sxy/tfoX) [Citrobacter freundii isolate FELIX_MS689]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686