Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   R6I12_RS26215 Genome accession   NZ_CP137702
Coordinates   5683795..5684196 (-) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas putida isolate FELIX_MS684     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5678795..5689196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I12_RS26200 (R6I12_26200) - 5680759..5682783 (-) 2025 WP_232014163.1 methyl-accepting chemotaxis protein -
  R6I12_RS26205 (R6I12_26205) - 5682831..5683385 (-) 555 WP_010955559.1 chemotaxis protein CheW -
  R6I12_RS26210 (R6I12_26210) pilH 5683382..5683747 (-) 366 WP_003249327.1 twitching motility response regulator PilH -
  R6I12_RS26215 (R6I12_26215) pilG 5683795..5684196 (-) 402 WP_010955560.1 response regulator Regulator
  R6I12_RS26220 (R6I12_26220) gshB 5684435..5685388 (+) 954 WP_010955561.1 glutathione synthase -
  R6I12_RS26225 (R6I12_26225) - 5685480..5686385 (+) 906 WP_010955562.1 energy transducer TonB -
  R6I12_RS26230 (R6I12_26230) - 5686555..5687124 (+) 570 WP_003249318.1 YqgE/AlgH family protein -
  R6I12_RS26235 (R6I12_26235) ruvX 5687124..5687549 (+) 426 WP_010955563.1 Holliday junction resolvase RuvX -
  R6I12_RS26240 (R6I12_26240) pyrR 5687599..5688117 (+) 519 WP_003249313.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  R6I12_RS26245 (R6I12_26245) - 5688130..5689134 (+) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=900005 R6I12_RS26215 WP_010955560.1 5683795..5684196(-) (pilG) [Pseudomonas putida isolate FELIX_MS684]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=900005 R6I12_RS26215 WP_010955560.1 5683795..5684196(-) (pilG) [Pseudomonas putida isolate FELIX_MS684]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGTATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGGCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
GCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632