Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R6I09_RS09825 Genome accession   NZ_CP137701
Coordinates   2135663..2136298 (+) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas putida isolate FELIX_MS683     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2130663..2141298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I09_RS09805 (R6I09_09805) - 2130972..2131904 (+) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  R6I09_RS09810 (R6I09_09810) - 2131901..2132680 (+) 780 WP_010952923.1 ABC transporter permease -
  R6I09_RS09815 (R6I09_09815) - 2132690..2133196 (-) 507 Protein_1913 DUF2062 domain-containing protein -
  R6I09_RS09820 (R6I09_09820) comA 2133339..2135552 (+) 2214 WP_010952924.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R6I09_RS09825 (R6I09_09825) exbB 2135663..2136298 (+) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R6I09_RS09830 (R6I09_09830) - 2136295..2136729 (+) 435 WP_010952926.1 ExbD/TolR family protein -
  R6I09_RS09835 (R6I09_09835) lpxK 2136729..2137730 (+) 1002 WP_049586866.1 tetraacyldisaccharide 4'-kinase -
  R6I09_RS09840 (R6I09_09840) - 2137775..2137960 (+) 186 WP_003247142.1 Trm112 family protein -
  R6I09_RS09845 (R6I09_09845) kdsB 2137957..2138721 (+) 765 WP_010952928.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R6I09_RS09850 (R6I09_09850) - 2138721..2139185 (+) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  R6I09_RS09855 (R6I09_09855) murB 2139182..2140201 (+) 1020 WP_049586861.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=899974 R6I09_RS09825 WP_026031862.1 2135663..2136298(+) (exbB) [Pseudomonas putida isolate FELIX_MS683]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=899974 R6I09_RS09825 WP_026031862.1 2135663..2136298(+) (exbB) [Pseudomonas putida isolate FELIX_MS683]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGTCTGCTGGGCACCGTGCTAGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82