Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R6I08_RS13985 Genome accession   NZ_CP137696
Coordinates   2831834..2832463 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate FELIX_MS533     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826834..2837463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I08_RS13970 (R6I08_13970) helD 2827076..2829130 (-) 2055 WP_001735080.1 DNA helicase IV -
  R6I08_RS13975 (R6I08_13975) yccF 2829253..2829699 (+) 447 WP_001261235.1 YccF domain-containing protein -
  R6I08_RS13980 (R6I08_13980) yccS 2829709..2831871 (+) 2163 WP_000875061.1 YccS family putative transporter -
  R6I08_RS13985 (R6I08_13985) sxy/tfoX 2831834..2832463 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R6I08_RS13990 (R6I08_13990) sulA 2832682..2833191 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  R6I08_RS13995 (R6I08_13995) ompA 2833548..2834588 (+) 1041 WP_000750416.1 porin OmpA -
  R6I08_RS14000 (R6I08_14000) matP 2834664..2835116 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  R6I08_RS14005 (R6I08_14005) ycbZ 2835302..2837062 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=899932 R6I08_RS13985 WP_000839153.1 2831834..2832463(-) (sxy/tfoX) [Escherichia coli isolate FELIX_MS533]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=899932 R6I08_RS13985 WP_000839153.1 2831834..2832463(-) (sxy/tfoX) [Escherichia coli isolate FELIX_MS533]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATATCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1