Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | R6I10_RS13935 | Genome accession | NZ_CP137695 |
| Coordinates | 2651985..2652395 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis isolate FELIX_MS382 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2647351..2698841 | 2651985..2652395 | within | 0 |
Gene organization within MGE regions
Location: 2647351..2698841
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R6I10_RS13910 (R6I10_13910) | yqeF | 2647518..2648249 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| R6I10_RS13915 (R6I10_13915) | cwlH | 2648501..2649253 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| R6I10_RS13920 (R6I10_13920) | yqeD | 2649440..2650066 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| R6I10_RS13925 (R6I10_13925) | gnd | 2650085..2650978 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| R6I10_RS13930 (R6I10_13930) | yqeB | 2651230..2651952 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| R6I10_RS13935 (R6I10_13935) | nucA/comI | 2651985..2652395 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| R6I10_RS13940 (R6I10_13940) | - | 2652591..2652941 (+) | 351 | Protein_2699 | sigma-70 family RNA polymerase sigma factor | - |
| R6I10_RS13945 (R6I10_13945) | spoIVCA | 2652969..2654429 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| R6I10_RS13950 (R6I10_13950) | - | 2654387..2654565 (-) | 179 | Protein_2701 | hypothetical protein | - |
| R6I10_RS13955 (R6I10_13955) | arsC | 2654920..2655339 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| R6I10_RS13960 (R6I10_13960) | acr3 | 2655351..2656391 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| R6I10_RS13965 (R6I10_13965) | arsK | 2656414..2656854 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| R6I10_RS13970 (R6I10_13970) | arsR | 2656915..2657232 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| R6I10_RS13975 (R6I10_13975) | yqcI | 2657604..2658368 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| R6I10_RS13980 (R6I10_13980) | rapE | 2658811..2659938 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| R6I10_RS13985 (R6I10_13985) | phrE | 2659928..2660062 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| R6I10_RS13990 (R6I10_13990) | - | 2660172..2660330 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| R6I10_RS13995 (R6I10_13995) | yqcG | 2660700..2662295 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| R6I10_RS14000 (R6I10_14000) | yqcF | 2662310..2662888 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| R6I10_RS14005 (R6I10_14005) | - | 2663006..2663152 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| R6I10_RS14010 (R6I10_14010) | - | 2663149..2663511 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| R6I10_RS14015 (R6I10_14015) | - | 2663527..2664006 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| R6I10_RS14020 (R6I10_14020) | cwlA | 2664171..2664989 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| R6I10_RS14025 (R6I10_14025) | skhD | 2665034..2665456 (-) | 423 | WP_003246208.1 | holin family protein | - |
| R6I10_RS14030 (R6I10_14030) | xepA | 2665501..2666394 (-) | 894 | WP_003246010.1 | phage-like element PBSX protein XepA | - |
| R6I10_RS14035 (R6I10_14035) | yqcE | 2666482..2666646 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| R6I10_RS14040 (R6I10_14040) | yqcD | 2666643..2666978 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| R6I10_RS14045 (R6I10_14045) | yqcC | 2666988..2668088 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| R6I10_RS14050 (R6I10_14050) | - | 2668091..2668363 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| R6I10_RS14055 (R6I10_14055) | yqcA | 2668360..2668938 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| R6I10_RS14060 (R6I10_14060) | yqbT | 2668922..2669968 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| R6I10_RS14065 (R6I10_14065) | yqbS | 2669961..2670386 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| R6I10_RS14070 (R6I10_14070) | yqbR | 2670399..2670662 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| R6I10_RS14075 (R6I10_14075) | yqbQ | 2670659..2671639 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| R6I10_RS14080 (R6I10_14080) | yqbP | 2671652..2672311 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| R6I10_RS14085 (R6I10_14085) | yqbO | 2672304..2677061 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| R6I10_RS14090 (R6I10_14090) | - | 2677064..2677201 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| R6I10_RS14095 (R6I10_14095) | - | 2677243..2677692 (-) | 450 | WP_003229933.1 | phage tail assembly chaperone | - |
| R6I10_RS14100 (R6I10_14100) | txpA | 2677838..2678017 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| R6I10_RS14105 (R6I10_14105) | bsrH | 2678397..2678486 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| R6I10_RS14110 (R6I10_14110) | yqbM | 2678740..2679183 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| R6I10_RS14115 (R6I10_14115) | yqbK | 2679186..2680586 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| R6I10_RS14120 (R6I10_14120) | - | 2680587..2680778 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| R6I10_RS14125 (R6I10_14125) | yqbJ | 2680775..2681212 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| R6I10_RS14130 (R6I10_14130) | yqbI | 2681225..2681728 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| R6I10_RS14135 (R6I10_14135) | yqbH | 2681725..2682087 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| R6I10_RS14140 (R6I10_14140) | gkpG | 2682084..2682479 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| R6I10_RS14145 (R6I10_14145) | yqbF | 2682483..2682794 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| R6I10_RS14150 (R6I10_14150) | skdG | 2682805..2683740 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| R6I10_RS14155 (R6I10_14155) | yqbD | 2683759..2684727 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| R6I10_RS14160 (R6I10_14160) | - | 2684760..2685413 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| R6I10_RS14165 (R6I10_14165) | yqbB | 2685454..2686371 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| R6I10_RS14170 (R6I10_14170) | yqbA | 2686368..2687900 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| R6I10_RS14175 (R6I10_14175) | stmB | 2687904..2689199 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| R6I10_RS14180 (R6I10_14180) | terS | 2689192..2689911 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| R6I10_RS14185 (R6I10_14185) | - | 2689979..2690443 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| R6I10_RS14190 (R6I10_14190) | yqaQ | 2690587..2691042 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| R6I10_RS14195 (R6I10_14195) | - | 2691240..2692169 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| R6I10_RS14200 (R6I10_14200) | yqaO | 2692243..2692449 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| R6I10_RS14205 (R6I10_14205) | yqaN | 2692531..2692959 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| R6I10_RS14210 (R6I10_14210) | - | 2693055..2693204 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| R6I10_RS14215 (R6I10_14215) | sknM | 2693195..2694136 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| R6I10_RS14220 (R6I10_14220) | yqaL | 2694018..2694695 (-) | 678 | WP_010886575.1 | DnaD domain-containing protein | - |
| R6I10_RS14225 (R6I10_14225) | recT | 2694771..2695625 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| R6I10_RS14230 (R6I10_14230) | yqaJ | 2695628..2696587 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| R6I10_RS14235 (R6I10_14235) | yqaI | 2696693..2696887 (-) | 195 | WP_003229905.1 | YqaI family protein | - |
| R6I10_RS14240 (R6I10_14240) | - | 2696847..2697020 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| R6I10_RS14245 (R6I10_14245) | sknH | 2697017..2697274 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| R6I10_RS14250 (R6I10_14250) | yqaG | 2697271..2697840 (-) | 570 | WP_004398626.1 | helix-turn-helix domain-containing protein | - |
| R6I10_RS14255 (R6I10_14255) | - | 2697914..2698054 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| R6I10_RS14260 (R6I10_14260) | yqaF | 2698084..2698314 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| R6I10_RS14265 (R6I10_14265) | sknR | 2698491..2698841 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=899891 R6I10_RS13935 WP_009967785.1 2651985..2652395(-) (nucA/comI) [Bacillus subtilis isolate FELIX_MS382]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=899891 R6I10_RS13935 WP_009967785.1 2651985..2652395(-) (nucA/comI) [Bacillus subtilis isolate FELIX_MS382]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |