Detailed information NTG0089985

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LDO90_RS03620
• Genome accession: NZ_AP025147
• Coordinates: 747875..751264 (-)
• Length: 1129 a.a.
• NCBI ID: WP_126609001.1
• Uniprot ID: A0AAV5NLQ3
• Organism: Vibrio penaeicida strain IFO 15641
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 742875..756264

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO90_RS03605	-	743128..744153 (-)	1026	WP_126607043.1	ABC transporter permease	-
LDO90_RS03610	-	744156..745142 (-)	987	WP_101113265.1	ABC transporter permease	-
LDO90_RS03615	-	745300..746979 (-)	1680	WP_101113264.1	ABC transporter substrate-binding protein	-
LDO90_RS03620	chiS	747875..751264 (-)	3390	WP_126609001.1	ATP-binding protein	Regulator
LDO90_RS03625	rsmC	751507..752532 (-)	1026	WP_126609002.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LDO90_RS03630	-	752623..753708 (-)	1086	WP_101113261.1	AI-2E family transporter	-
LDO90_RS03635	hemL	753945..755237 (-)	1293	WP_126609003.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LDO90_RS03640	erpA	755438..755779 (+)	342	WP_126609004.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127236.72 Da
• Isoelectric Point: 5.4859

>NTDB_id=89985 LDO90_RS03620 WP_126609001.1 747875..751264(-) (chiS) [Vibrio penaeicida strain IFO 15641]
MFKPNKKQKFKRLQHTLMVAFLVLSITPLTMIALFFLQSHSKDLQEQSTSHLLSVRDTKKQQLLDYFEAKESEVMGFVRS
ELAYNSGGRFYGLINAFNNLGETIEQARDYAQQRYIQGSGDQIKTSVLPESEDYQGSERYRLMHKRYHRRYVDLLKRSDF
DDILLVDMDGNVVYSLNKYDNYGTNLNTGKYSESNLGKTFNALKEKVRKHKDNQDFTPIAMSDFALEGNEHVAWFAAPIV
QHEYLHSYALFRLPSTKLLSLFEDAATSKTIKAFLVGEDKAARIFNVSQEEIDESAEIIELALNDQTSVKTFVNTSGENI
IAAFTNIQIQNIEWALVAERTEAEAFARIQQLEKVFVVAMFIAIILVVICSHYLSNFITSPLLKLTWSAERVSAGDLDEV
MFETKRKDEIGRLGVSFQRMQRSIREKILTIKSQNEELEAHLKVIQTQNDELQLANKLKDEFLATTSHELRTPLHGMVGI
AEALISGANGPIPANQKHQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIQASAVNLSSSTRLVLELSQHLLGNKSIRII
NQVPMDLPLVSADPQRIEQVLYNLIGNAIKYTSEGKIVISATVLDEKLRVQVVDTGQGIPAEQLEHIFEPLIQAGQDSSR
YRQGAGLGLSISRQLIELMGGTLYVSSQPLVGTTFSFSLPLASEEEISISKQLGTTQSHFQAPDSSDSAKLDENSLPENP
DGPLIVVADDEPVNLQILDSFLKMEGYRVKTAKDGTEALELVQQEKPELLLLDVMMPGLSGYQVCEQVRLSYDHSELPVI
MLTALSQTNDRIKGFDSGANDYLTKPFNKLELASRIKAHLAAGKAELRRIENDKLQAELKQRALVEANLLETQGRLLEQL
ESAPEAILCLRDDGRIRFANEAAAKLFKRTQEQLKRSNGDEVIAPKYLNLQEDHFCGGIDVYVDDRRDHISADVLKLPEG
SDIHYMYIFNVGGGLNAARINNLETAVEALSSYAFEGDKGKLQQLKELGGEFTRIADKVSGRGGDKQELMREILVDSMTT
AIDYWESETGQTKFSFAEQSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVINSIEFILEHCHTPSGQREKLITLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=89985 LDO90_RS03620 WP_126609001.1 747875..751264(-) (chiS) [Vibrio penaeicida strain IFO 15641]
ATGTTTAAACCTAATAAAAAACAAAAATTTAAACGTCTTCAGCACACGTTGATGGTGGCTTTTCTCGTTTTGAGCATCAC
GCCACTGACTATGATCGCGCTGTTTTTTCTCCAGTCCCATAGTAAAGATTTACAAGAACAAAGTACGTCTCACCTCCTTT
CAGTTCGAGATACAAAAAAACAACAGTTACTCGATTATTTCGAAGCCAAAGAGTCTGAGGTGATGGGCTTTGTCCGTTCT
GAACTGGCGTACAATAGCGGAGGAAGGTTCTACGGTTTAATAAATGCTTTCAATAACTTGGGCGAGACCATTGAGCAAGC
CCGAGACTATGCACAACAGCGTTATATACAAGGTTCTGGCGATCAAATAAAAACGTCGGTGTTACCAGAGTCCGAAGACT
ATCAGGGTAGTGAGCGCTACCGATTAATGCACAAACGCTATCACCGCCGCTACGTTGATTTGCTGAAACGTAGCGATTTT
GACGATATTTTATTAGTAGATATGGATGGTAATGTCGTTTATTCCCTTAATAAATATGACAATTATGGTACTAATCTAAA
TACCGGAAAATACAGTGAAAGCAATCTAGGCAAAACTTTTAACGCGTTAAAAGAAAAAGTTAGAAAGCACAAAGACAACC
AAGATTTCACGCCTATCGCTATGTCGGACTTTGCTTTAGAAGGCAACGAACATGTTGCGTGGTTTGCCGCCCCCATTGTG
CAACATGAATACTTACACAGTTACGCGCTATTTCGTTTGCCGAGCACCAAACTTTTGTCGCTGTTTGAAGATGCTGCAAC
GAGTAAAACCATCAAAGCTTTCTTAGTTGGTGAAGATAAAGCAGCTCGTATTTTTAACGTATCTCAAGAAGAAATTGACG
AAAGTGCCGAGATTATCGAGCTTGCATTAAACGATCAAACATCAGTAAAAACCTTTGTAAACACCTCTGGCGAAAACATT
ATTGCCGCATTTACGAATATTCAAATCCAAAACATTGAATGGGCATTAGTTGCTGAGCGTACAGAAGCAGAAGCTTTTGC
GCGAATACAACAGCTTGAAAAAGTGTTTGTGGTCGCCATGTTTATCGCCATTATCTTGGTGGTGATTTGTTCACATTATT
TGTCTAATTTTATTACCTCCCCTCTTCTCAAGCTAACTTGGTCTGCAGAACGAGTGTCGGCAGGTGATCTTGATGAAGTG
ATGTTTGAAACCAAACGTAAAGATGAAATCGGCAGGTTAGGTGTCAGCTTCCAGCGGATGCAGCGCTCAATACGCGAGAA
AATTCTAACGATCAAATCTCAGAATGAAGAGCTTGAAGCGCACTTGAAGGTGATTCAGACCCAAAATGATGAATTGCAAC
TCGCCAACAAGTTAAAAGATGAATTTCTGGCAACAACTTCGCATGAATTGAGAACACCACTACACGGAATGGTCGGTATT
GCCGAGGCTCTCATCAGTGGCGCAAACGGTCCTATCCCAGCCAATCAGAAACACCAACTCGACATCATCATTAACAGCGG
TCAGCGGCTGGCGACTTTGGTTGATGACTTGCTCGATTACCATAAGATGCGCTATGGCAGCCTAGATATTCAAGCCTCCG
CGGTAAACTTATCCTCGTCGACTCGACTTGTTTTGGAATTATCTCAGCATTTGTTGGGGAACAAATCCATTCGCATCATT
AATCAAGTCCCAATGGATCTTCCTTTGGTTTCCGCAGATCCTCAGCGCATTGAGCAAGTACTTTACAACCTAATCGGTAA
TGCTATTAAGTACACGTCGGAAGGTAAAATCGTTATTTCCGCGACCGTACTCGACGAGAAACTTAGAGTACAAGTTGTCG
ATACCGGTCAAGGTATACCGGCAGAACAGCTTGAACATATATTCGAACCCTTGATTCAAGCAGGACAAGACTCTAGTCGC
TATCGACAAGGCGCAGGGCTAGGACTATCGATTAGCCGCCAGTTAATTGAACTGATGGGTGGAACGCTGTATGTCAGTAG
CCAACCTTTAGTAGGCACCACATTCAGTTTCTCGCTACCTTTAGCCTCTGAAGAAGAGATTTCGATATCCAAACAACTGG
GGACAACACAAAGCCACTTTCAGGCACCCGATAGTTCGGACAGTGCCAAACTGGATGAAAACTCACTACCTGAAAACCCA
GACGGTCCACTGATTGTCGTTGCTGATGATGAACCAGTGAACCTACAGATTCTGGACAGCTTCCTAAAAATGGAAGGCTA
TAGAGTTAAAACAGCAAAAGATGGGACTGAAGCATTAGAATTGGTTCAGCAAGAGAAGCCTGAGCTGCTCCTTTTAGACG
TTATGATGCCAGGCTTAAGCGGGTATCAAGTATGTGAGCAAGTCAGGTTGAGTTATGACCACTCAGAGTTACCTGTCATC
ATGCTTACCGCTTTAAGTCAAACTAACGACAGAATCAAAGGCTTTGATAGCGGTGCCAATGACTATCTCACTAAGCCATT
CAACAAATTAGAACTAGCATCGCGTATTAAAGCTCACCTTGCTGCAGGTAAAGCAGAGCTAAGGCGAATTGAAAATGACA
AACTTCAGGCTGAATTAAAGCAGCGTGCACTTGTAGAGGCAAACTTGCTTGAAACACAAGGTAGGCTGCTTGAGCAATTA
GAATCAGCTCCCGAAGCTATTCTCTGTCTGCGGGATGATGGTCGAATCCGTTTCGCAAATGAAGCAGCAGCAAAACTGTT
TAAACGGACACAAGAGCAACTTAAACGCTCTAATGGCGATGAAGTTATCGCACCTAAATACCTCAATCTTCAGGAAGACC
ACTTCTGCGGCGGTATTGATGTATATGTCGATGATCGACGCGACCACATTTCTGCGGATGTCCTTAAGCTCCCAGAAGGC
TCTGATATCCACTATATGTATATCTTCAATGTTGGTGGCGGCTTGAACGCAGCCAGAATTAACAACCTAGAAACCGCCGT
AGAGGCACTATCAAGCTACGCATTTGAAGGGGATAAAGGTAAGCTCCAACAGCTCAAAGAATTAGGCGGTGAATTTACAC
GTATCGCCGACAAAGTATCTGGGCGCGGTGGTGATAAACAGGAGCTAATGAGAGAAATCCTCGTCGATTCAATGACGACA
GCCATCGATTACTGGGAGTCTGAAACGGGTCAGACTAAGTTCTCTTTTGCGGAACAAAGCGGGCTGTGGCGTGTATACCT
AGACAGAAGTACACTTCAAACCCGAACTCTTGATAAGTATTTAAGGGTAGAAACACTACCAAAAACGCCTAGGTGGCGAA
CCGTCATTAACTCTATTGAGTTCATACTAGAGCATTGCCATACACCTAGTGGTCAACGTGAAAAGTTGATTACGCTAAGA
GACAAGCTGCAAAAACTTTTGACTTCGTAG

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-682)

• HAMP domain (HAMP) (374-426)

• Response regulator receiver domain (Response_reg) (725-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	71.15	100	0.712