Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   LDO37_RS24130 Genome accession   NZ_AP025145
Coordinates   1304691..1305788 (-) Length   365 a.a.
NCBI ID   WP_126607006.1    Uniprot ID   A0AAV5NR65
Organism   Vibrio penaeicida strain IFO 15640T     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1299691..1310788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO37_RS24115 - 1299766..1301025 (+) 1260 WP_126609371.1 hydroxymethylglutaryl-CoA reductase -
  LDO37_RS24120 - 1301192..1301839 (-) 648 WP_126609372.1 hypothetical protein -
  LDO37_RS24125 - 1302066..1304672 (-) 2607 WP_224055471.1 LuxQ periplasmic sensor domain-containing protein -
  LDO37_RS24130 luxP 1304691..1305788 (-) 1098 WP_126607006.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  LDO37_RS24135 - 1305954..1306586 (-) 633 WP_126607007.1 response regulator -
  LDO37_RS24140 narQ 1306573..1308291 (-) 1719 WP_126607008.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  LDO37_RS24145 napF 1308550..1309041 (+) 492 WP_126607009.1 ferredoxin-type protein NapF -
  LDO37_RS24150 - 1309044..1309349 (+) 306 WP_126607010.1 chaperone NapD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 40887.15 Da        Isoelectric Point: 6.7664

>NTDB_id=89980 LDO37_RS24130 WP_126607006.1 1304691..1305788(-) (luxP) [Vibrio penaeicida strain IFO 15640T]
MKLQHLLVGTLSLALTSGLNAAQALNGYWEYSDFLKTFPEQQGLVRSFSEVVRSEPTPLAVRQTKPVTISVIYPGEQVSD
YWRRNITAFSKRMDELGIDYQINKVFTRPNVDIRQQSASLMEAIRNKSGYLIFTLDTGRHRKFIEHVLNSPDTKLILQNI
TTPLKAWSQNQPFMYVGFDHATGSRALASHFKSRFPRGGDYSVLFFSQGYISAARGDTFIEAMSNEGEAYQLRSSFYTKA
SRQSGYEAAKNALSQGHNLSFIYTCSTDVALGATDAIKELGRKDIVINGWGGGSAELEAIQKGELNVTIMRMNDDTGVAM
AEAIKMDLEDKPVPTVYSGDFEIVTSQDSEERIQELKLRAFRYSD

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=89980 LDO37_RS24130 WP_126607006.1 1304691..1305788(-) (luxP) [Vibrio penaeicida strain IFO 15640T]
ATGAAATTGCAACATCTTTTGGTTGGCACCTTAAGTTTGGCTCTAACATCCGGCTTAAATGCAGCACAAGCTCTCAATGG
CTATTGGGAATACAGTGATTTTCTAAAAACATTTCCTGAACAGCAGGGGCTCGTGAGGAGTTTTAGTGAGGTTGTTCGCT
CTGAGCCAACACCCTTAGCAGTAAGGCAAACGAAACCAGTAACGATTTCCGTTATCTATCCTGGCGAACAAGTCTCAGAT
TATTGGCGACGTAACATCACTGCGTTTAGTAAACGTATGGATGAATTGGGCATTGATTACCAAATTAACAAAGTATTCAC
GCGGCCTAATGTCGACATTAGGCAACAAAGTGCTTCGTTGATGGAGGCAATACGCAACAAATCCGGTTATTTGATCTTTA
CACTTGATACCGGTCGTCACCGAAAATTCATTGAGCACGTTCTAAACAGCCCAGATACAAAACTCATACTTCAAAACATT
ACCACTCCACTTAAAGCATGGTCTCAGAACCAGCCATTCATGTATGTTGGGTTTGACCACGCAACAGGTAGCCGTGCACT
CGCAAGCCATTTTAAATCCCGTTTTCCTCGCGGTGGCGACTACTCTGTACTTTTCTTTTCGCAAGGTTACATAAGTGCCG
CGCGCGGCGATACATTTATTGAAGCGATGAGTAACGAGGGTGAGGCGTACCAATTACGTTCGTCATTTTACACAAAAGCG
AGTCGTCAAAGCGGATACGAAGCGGCGAAAAACGCGCTTAGTCAAGGTCACAACTTATCCTTTATCTATACGTGCTCTAC
CGATGTTGCGTTGGGGGCAACTGACGCAATTAAAGAGCTGGGTCGCAAAGATATAGTAATTAACGGCTGGGGTGGTGGAA
GTGCAGAGCTTGAAGCGATACAAAAAGGTGAATTGAATGTTACCATTATGAGAATGAACGATGATACTGGTGTTGCGATG
GCGGAAGCCATTAAAATGGACCTAGAGGATAAACCTGTCCCAACCGTTTATTCCGGAGATTTTGAGATAGTAACCAGTCA
AGACAGTGAAGAAAGAATACAAGAATTAAAGCTTCGTGCTTTCAGATATTCTGACTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.789

97.26

0.63

Multiple sequence alignment