Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   R7892_RS07545 Genome accession   NZ_CP137688
Coordinates   1568351..1570159 (-) Length   602 a.a.
NCBI ID   WP_318239230.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain KD6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563351..1575159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R7892_RS07520 (R7892_07520) mgtE 1563732..1565099 (-) 1368 WP_318239229.1 magnesium transporter -
  R7892_RS07525 (R7892_07525) - 1565115..1566011 (-) 897 WP_279074061.1 RluA family pseudouridine synthase -
  R7892_RS07530 (R7892_07530) - 1565989..1566807 (-) 819 WP_010689259.1 NAD kinase -
  R7892_RS07535 (R7892_07535) - 1566844..1567473 (-) 630 WP_289189601.1 GTP pyrophosphokinase family protein -
  R7892_RS07540 (R7892_07540) - 1567678..1568307 (+) 630 WP_289189530.1 DsbA family protein -
  R7892_RS07545 (R7892_07545) pepF 1568351..1570159 (-) 1809 WP_318239230.1 oligoendopeptidase F Regulator
  R7892_RS07550 (R7892_07550) - 1570198..1571172 (-) 975 WP_318239231.1 competence protein CoiA -
  R7892_RS07555 (R7892_07555) - 1571266..1572015 (-) 750 WP_289189527.1 adaptor protein MecA -
  R7892_RS07560 (R7892_07560) spxA 1572150..1572548 (-) 399 WP_137421734.1 transcriptional regulator SpxA -
  R7892_RS07565 (R7892_07565) nrdG 1572901..1573581 (-) 681 WP_289190867.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68272.00 Da        Isoelectric Point: 4.7054

>NTDB_id=899792 R7892_RS07545 WP_318239230.1 1568351..1570159(-) (pepF) [Ligilactobacillus murinus strain KD6]
MSEVTRLPKRSEVPLELTWDLTKIFATDAEFEVAFAQVAKAAEDFEQYKGTLGNSAQAFLAALTAMLELDRQLEVVYVYA
SMKNDEDTANAKYQALMARVQKLLADVSAKLAWFRPELLALAPEKLASYYQDEPKLNAYKTLIDDWTRLRAHVLSEKEEA
LLAGASDILGASANVFEVLNNADLKFPVVTDESGSKVELSNGVYGKLLESTERPVRREAFEQLYAVYKQFRHTFAATLSA
HVRKHNFSAKLRNYQSAKEASLAQNDIPVAVYDTLVKTVNENLGLLHEYVALRKDILGVDELHMYDMYTPLTGEPTLTLT
YEQAKKMTLEALSVLGEEYLAYVEKAFDERWIDVVANAGKRSGAYSGGAYDTAPYILLNWQDTLDNLFTLVHEMGHTMHS
YYTRTNQPYQYGDYSIFVAEIASTTNENLLTQYLLETQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEAWIHEQDASQV
PLTADLMSDFYGKLNQRYYGNAVENDPEIAYEWSRIPHFYYNFYVYQYATGFGAASTLAERVLDEEPAHTEAYLDYLKAG
SSAAPLEVMKKAGVDMTDSKYLEKAFGIFKERLAELKELLAK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=899792 R7892_RS07545 WP_318239230.1 1568351..1570159(-) (pepF) [Ligilactobacillus murinus strain KD6]
ATGAGTGAAGTAACACGTCTACCAAAAAGATCAGAGGTACCACTCGAACTTACTTGGGATCTGACCAAGATCTTTGCAAC
TGATGCAGAATTTGAAGTAGCCTTTGCGCAAGTAGCCAAAGCAGCTGAAGATTTTGAACAATATAAGGGAACACTAGGGA
ATAGCGCTCAAGCCTTTTTAGCTGCTCTAACGGCCATGCTCGAGTTAGATCGCCAACTTGAAGTAGTTTATGTCTATGCA
AGCATGAAAAACGATGAGGATACCGCCAATGCTAAGTACCAAGCTTTGATGGCACGGGTCCAAAAGTTATTGGCTGATGT
TTCAGCTAAATTAGCTTGGTTTCGACCTGAGTTATTAGCTTTAGCACCGGAAAAATTAGCAAGCTATTATCAAGATGAAC
CTAAATTAAATGCATATAAAACATTGATCGATGATTGGACAAGACTTCGAGCACATGTCTTGAGTGAAAAAGAAGAAGCG
CTGTTAGCAGGTGCAAGCGATATTTTGGGCGCTTCAGCTAATGTTTTTGAAGTTTTAAACAATGCTGATCTAAAATTCCC
CGTAGTAACTGATGAATCGGGCTCAAAGGTCGAGCTTTCAAATGGGGTCTACGGCAAATTGCTCGAATCGACTGAGCGCC
CAGTTAGACGTGAAGCATTTGAACAGTTATATGCTGTGTATAAGCAATTCAGACATACGTTTGCGGCCACACTGTCAGCG
CATGTACGTAAGCATAATTTTTCAGCTAAATTACGTAATTATCAAAGTGCCAAGGAAGCTTCATTAGCCCAAAATGATAT
TCCAGTAGCTGTTTATGATACTTTGGTCAAAACAGTCAATGAAAATTTGGGGCTACTGCATGAGTATGTAGCTTTACGCA
AGGATATCTTAGGTGTCGATGAATTGCACATGTATGATATGTATACTCCATTGACGGGTGAACCAACATTGACGTTAACT
TATGAACAGGCTAAAAAGATGACCTTAGAGGCCTTGAGCGTCTTAGGCGAAGAATATCTTGCTTATGTAGAGAAGGCTTT
TGATGAACGTTGGATCGATGTGGTCGCTAACGCGGGTAAACGTTCAGGAGCTTACTCAGGTGGGGCTTATGATACTGCAC
CATATATTTTATTGAATTGGCAAGATACGTTGGATAACCTCTTTACGTTAGTTCATGAGATGGGACACACGATGCACAGC
TACTATACACGGACTAATCAACCTTATCAATATGGAGATTATTCGATCTTTGTTGCTGAGATCGCCTCAACGACAAACGA
AAACTTGTTGACCCAGTATTTGTTAGAGACTCAAACTGATCCTAAGGTACGGGCTTACGTATTGAATCACTATCTAGATG
GCTTTAAGGGAACTGTTTATCGGCAAACCCAATTTGCTGAATTTGAAGCTTGGATACATGAACAAGATGCTTCACAAGTA
CCATTGACAGCAGATCTGATGTCAGATTTTTATGGTAAATTAAATCAACGTTACTATGGTAATGCAGTTGAAAATGACCC
AGAGATTGCATATGAATGGTCACGGATCCCGCATTTCTACTACAATTTCTATGTTTATCAATACGCAACTGGTTTTGGTG
CAGCTTCTACTTTAGCAGAGCGTGTCTTAGATGAAGAGCCTGCCCATACGGAAGCTTATTTGGACTACTTAAAAGCAGGT
AGTTCAGCTGCTCCATTGGAGGTAATGAAAAAAGCTGGTGTTGATATGACTGATAGTAAATATTTAGAGAAAGCTTTTGG
GATCTTTAAGGAACGCTTGGCTGAATTAAAAGAGCTATTAGCTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.794

98.505

0.53