Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R7892_RS05945 Genome accession   NZ_CP137688
Coordinates   1208234..1209913 (+) Length   559 a.a.
NCBI ID   WP_289190344.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain KD6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1203234..1214913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R7892_RS05915 (R7892_05915) folD 1203457..1204305 (+) 849 WP_318239057.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  R7892_RS05920 (R7892_05920) xseA 1204305..1205648 (+) 1344 WP_318239058.1 exodeoxyribonuclease VII large subunit -
  R7892_RS05925 (R7892_05925) - 1205645..1205872 (+) 228 WP_010688947.1 exodeoxyribonuclease VII small subunit -
  R7892_RS05930 (R7892_05930) - 1205976..1206854 (+) 879 WP_318239059.1 farnesyl diphosphate synthase -
  R7892_RS05935 (R7892_05935) - 1206869..1207696 (+) 828 WP_318239060.1 TlyA family RNA methyltransferase -
  R7892_RS05940 (R7892_05940) - 1207717..1208175 (+) 459 WP_318239061.1 ArgR family transcriptional regulator -
  R7892_RS05945 (R7892_05945) recN 1208234..1209913 (+) 1680 WP_289190344.1 DNA repair protein RecN Machinery gene
  R7892_RS05950 (R7892_05950) lexA 1209998..1210621 (-) 624 WP_318239062.1 transcriptional repressor LexA -
  R7892_RS05955 (R7892_05955) - 1210786..1211082 (+) 297 WP_010688955.1 DUF896 domain-containing protein -
  R7892_RS05960 (R7892_05960) - 1211163..1211387 (+) 225 WP_004047611.1 YneF family protein -
  R7892_RS05965 (R7892_05965) - 1211436..1212062 (-) 627 WP_289190343.1 lysophospholipid acyltransferase family protein -
  R7892_RS05970 (R7892_05970) - 1212269..1213027 (+) 759 WP_318239063.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  R7892_RS05975 (R7892_05975) - 1213011..1213298 (+) 288 WP_137421421.1 GIY-YIG nuclease family protein -
  R7892_RS05980 (R7892_05980) - 1213440..1214435 (+) 996 WP_318239064.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63063.22 Da        Isoelectric Point: 4.5450

>NTDB_id=899787 R7892_RS05945 WP_289190344.1 1208234..1209913(+) (recN) [Ligilactobacillus murinus strain KD6]
MLQELMIRDFAIIEQLTVDFGTNMTVLTGETGAGKSIIIDALGLLAGGRGSSDFIRKGANKSLLQGQFTIPKATRTYELL
DEFGIECEDDVLILQRDIYRSGKNVCRINGVLVNLGTLRQVGQTLIDIHGQNEHQELMDPERHLALVDNYQPEILAKLAQ
YQTLYANYRRLSQALEQREKNAHEWAQRLDMLQFQVNEISEAQLHEGEEEELQEQKRQLDNYQTIHHALEMSYQALNGEE
LDVMSVLGNVMSELEDVAEFNSELAAIYEKVSDAFYNLQDAAHEVSGQLSDLEWDEELLNSIEARLETIHQLKRKYGDSI
ETILAYYDKIKRELETMQQSDENLEQQVEQVKEAHAKAKELALEISELRKQTAKRLENEIHQQLSALYMDKAVFEVRFLP
ENGQLTETGLDRVEFYIQTNPGEEMGALAKIASGGELSRIMLALKTIFAQNKGVTSIIFDEVDTGVSGRVAQAIAEKISQ
IATNSQVLCITHLPQVAAVADHHYFIAKHVANGRTETSLTILNDKERIEELARMLSGSSITTLTLEHAEELLKMAKASK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=899787 R7892_RS05945 WP_289190344.1 1208234..1209913(+) (recN) [Ligilactobacillus murinus strain KD6]
TTGTTACAAGAATTAATGATCCGTGATTTTGCGATTATTGAGCAGTTGACCGTTGATTTTGGAACGAATATGACGGTCTT
GACTGGTGAAACGGGGGCTGGTAAATCCATCATTATCGATGCTTTAGGACTACTAGCAGGTGGACGTGGCTCGAGTGATT
TTATCCGTAAGGGGGCTAATAAGTCATTACTCCAAGGACAATTTACCATCCCAAAGGCGACGCGCACATATGAGCTTTTA
GATGAGTTTGGGATCGAATGCGAAGATGATGTTTTGATCTTACAACGCGATATTTATCGCAGTGGTAAAAATGTTTGTCG
GATAAATGGCGTTTTGGTCAATTTAGGCACATTGCGACAGGTAGGGCAAACCTTGATCGATATCCACGGGCAAAATGAGC
ATCAAGAATTGATGGATCCTGAGCGGCATTTAGCCCTAGTTGATAATTATCAGCCTGAGATCCTAGCTAAATTGGCACAA
TACCAGACGCTTTATGCCAATTATCGTCGTCTTTCACAGGCACTAGAACAACGTGAGAAAAATGCGCATGAGTGGGCGCA
AAGACTAGATATGTTACAATTTCAAGTTAATGAGATCAGTGAGGCACAGTTACACGAGGGCGAAGAAGAAGAGCTCCAAG
AACAAAAACGCCAATTGGATAATTATCAAACGATCCATCACGCCTTAGAGATGAGTTATCAAGCACTAAATGGTGAAGAA
TTAGATGTGATGAGCGTTCTAGGAAATGTCATGAGTGAGCTAGAAGACGTGGCTGAGTTCAATTCTGAATTAGCCGCGAT
CTACGAAAAGGTTTCTGATGCCTTCTATAATCTGCAAGATGCAGCACATGAAGTTTCAGGGCAATTAAGTGATCTGGAAT
GGGATGAAGAACTATTAAATTCCATCGAAGCACGGCTCGAAACGATCCATCAGCTCAAGCGTAAATACGGTGATTCGATC
GAAACGATCTTGGCTTATTACGATAAGATAAAACGTGAGCTTGAAACGATGCAACAAAGCGATGAAAACTTAGAACAGCA
AGTCGAACAGGTCAAAGAAGCTCATGCAAAGGCAAAAGAACTAGCACTAGAGATCAGTGAGTTACGTAAACAGACCGCTA
AACGCCTCGAAAACGAGATCCATCAGCAATTGAGTGCACTTTATATGGATAAAGCTGTTTTTGAAGTACGTTTCTTACCA
GAGAACGGGCAATTGACCGAGACAGGTCTTGATCGGGTCGAATTTTACATTCAAACTAATCCCGGAGAAGAAATGGGTGC
TTTAGCCAAGATCGCTTCTGGTGGTGAATTGTCGCGGATCATGCTCGCACTAAAGACGATCTTTGCCCAAAATAAGGGCG
TGACGAGTATTATTTTTGATGAGGTCGATACTGGAGTCAGTGGGCGCGTCGCCCAGGCAATTGCGGAAAAGATCAGTCAG
ATCGCAACTAATTCGCAAGTGCTGTGTATCACCCACTTACCACAGGTCGCAGCTGTAGCAGATCACCACTACTTTATTGC
TAAGCATGTAGCTAATGGTCGAACTGAAACTTCGCTGACGATCTTAAATGATAAGGAACGGATCGAAGAATTAGCTCGGA
TGTTATCAGGGTCTTCGATCACGACTTTGACGCTAGAACATGCAGAAGAATTGTTAAAAATGGCTAAGGCAAGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.314

100

0.488