Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   R6Y88_RS20650 Genome accession   NZ_CP137687
Coordinates   4019697..4020317 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4014697..4025317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS20630 dnaD 4014982..4015680 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  R6Y88_RS20635 nth 4015699..4016358 (+) 660 WP_015483371.1 endonuclease III -
  R6Y88_RS20640 ypoC 4016355..4016849 (+) 495 WP_015383948.1 YpoC family protein -
  R6Y88_RS20645 ponA 4016925..4019675 (-) 2751 WP_015383947.1 transglycosylase domain-containing protein -
  R6Y88_RS20650 recU 4019697..4020317 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  R6Y88_RS20655 yppC 4020358..4021320 (+) 963 WP_015383945.1 DUF2515 domain-containing protein -
  R6Y88_RS20660 sspM 4021345..4021449 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  R6Y88_RS20665 yppD 4021647..4021892 (+) 246 WP_004398488.1 YppD family protein -
  R6Y88_RS20670 yppE 4021938..4022309 (+) 372 WP_015483369.1 YppE family protein -
  R6Y88_RS20675 yppF 4022348..4022536 (-) 189 WP_003230690.1 YppF family protein -
  R6Y88_RS20680 sppG 4022723..4023100 (+) 378 WP_014477159.1 YppG family protein -
  R6Y88_RS20685 ypqA 4023121..4023540 (-) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  R6Y88_RS20690 ptsA 4023678..4024184 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=899772 R6Y88_RS20650 WP_004399067.1 4019697..4020317(-) (recU) [Bacillus subtilis strain YT-4]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=899772 R6Y88_RS20650 WP_004399067.1 4019697..4020317(-) (recU) [Bacillus subtilis strain YT-4]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1