Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   R6Y88_RS19670 Genome accession   NZ_CP137687
Coordinates   3843619..3844422 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838619..3849422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS19650 yqxC 3838740..3839585 (+) 846 WP_015384068.1 TlyA family RNA methyltransferase -
  R6Y88_RS19655 argR 3839683..3840132 (+) 450 WP_015384067.1 arginine repressor ArgR -
  R6Y88_RS19660 recN 3840169..3841899 (+) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  R6Y88_RS19665 spoIVB 3842074..3843354 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  R6Y88_RS19670 spo0A 3843619..3844422 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  R6Y88_RS19675 yqiG 3844888..3846006 (-) 1119 WP_015483421.1 NADH-dependent flavin oxidoreductase -
  R6Y88_RS19680 - 3846079..3846231 (-) 153 WP_015384065.1 hypothetical protein -
  R6Y88_RS19685 - 3846539..3846835 (+) 297 WP_015384064.1 hypothetical protein -
  R6Y88_RS19690 yqiI 3846855..3847475 (+) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  R6Y88_RS19695 glpQB 3847548..3848279 (+) 732 WP_015384062.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=899771 R6Y88_RS19670 WP_003226427.1 3843619..3844422(+) (spo0A) [Bacillus subtilis strain YT-4]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=899771 R6Y88_RS19670 WP_003226427.1 3843619..3844422(+) (spo0A) [Bacillus subtilis strain YT-4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTCAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1