Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R6Y88_RS19145 Genome accession   NZ_CP137687
Coordinates   3753774..3754541 (+) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3748774..3759541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS19115 pgpH 3749070..3751205 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  R6Y88_RS19120 ybeY 3751206..3751679 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  R6Y88_RS19125 unpK 3751660..3752031 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  R6Y88_RS19130 - 3752150..3752560 (+) 411 WP_003230049.1 cytidine deaminase -
  R6Y88_RS19135 era 3752541..3753446 (+) 906 WP_003230051.1 GTPase Era -
  R6Y88_RS19140 yqzL 3753594..3753737 (+) 144 WP_003230053.1 YqzL family protein -
  R6Y88_RS19145 recO 3753774..3754541 (+) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  R6Y88_RS19150 glyQ 3754839..3755726 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  R6Y88_RS19155 glyS 3755719..3757758 (+) 2040 WP_015384117.1 glycine--tRNA ligase subunit beta -
  R6Y88_RS19160 ccpN 3757891..3758529 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  R6Y88_RS19165 ppsR 3758555..3759367 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=899760 R6Y88_RS19145 WP_015384118.1 3753774..3754541(+) (recO) [Bacillus subtilis strain YT-4]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=899760 R6Y88_RS19145 WP_015384118.1 3753774..3754541(+) (recO) [Bacillus subtilis strain YT-4]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTATTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATACTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992