Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   R6Y88_RS18895 Genome accession   NZ_CP137687
Coordinates   3710690..3711100 (+) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   A0A6I4D881
Organism   Bacillus subtilis strain YT-4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3705690..3716100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS18865 yrkP 3706388..3707083 (+) 696 WP_015384143.1 two-component response regulator YrkP -
  R6Y88_RS18870 yrkQ 3707070..3708368 (+) 1299 WP_015483453.1 two-component system sensor histidine kinase YrkQ -
  R6Y88_RS18875 psiE 3708414..3708830 (+) 417 WP_003246154.1 phosphate-starvation-inducible protein PsiE -
  R6Y88_RS18880 - 3709371..3709535 (+) 165 WP_015483452.1 hypothetical protein -
  R6Y88_RS18885 - 3709493..3709684 (+) 192 Protein_3657 recombinase family protein -
  R6Y88_RS18890 sigK 3709766..3710494 (-) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  R6Y88_RS18895 nucA/comI 3710690..3711100 (+) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  R6Y88_RS18900 yqeB 3711133..3711855 (-) 723 WP_015384139.1 hypothetical protein -
  R6Y88_RS18905 gnd 3712107..3713000 (+) 894 WP_015384138.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  R6Y88_RS18910 yqeD 3713019..3713645 (-) 627 WP_015384137.1 TVP38/TMEM64 family protein -
  R6Y88_RS18915 cwlH 3713832..3714584 (+) 753 WP_015483449.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  R6Y88_RS18920 yqeF 3714836..3715567 (+) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  R6Y88_RS18925 - 3715873..3716013 (-) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=899756 R6Y88_RS18895 WP_009967785.1 3710690..3711100(+) (nucA/comI) [Bacillus subtilis strain YT-4]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=899756 R6Y88_RS18895 WP_009967785.1 3710690..3711100(+) (nucA/comI) [Bacillus subtilis strain YT-4]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGTGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4D881

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529