Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   R6Y88_RS17885 Genome accession   NZ_CP137687
Coordinates   3538524..3539270 (+) Length   248 a.a.
NCBI ID   WP_015384274.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3533524..3544270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS17870 - 3533751..3533942 (-) 192 WP_003222590.1 hypothetical protein -
  R6Y88_RS17875 valS 3534390..3537032 (+) 2643 WP_015483523.1 valine--tRNA ligase -
  R6Y88_RS17880 folC 3537092..3538384 (+) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  R6Y88_RS17885 comC 3538524..3539270 (+) 747 WP_015384274.1 A24 family peptidase Machinery gene
  R6Y88_RS17890 spoIIB 3539404..3540402 (+) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  R6Y88_RS17895 maf 3540555..3541124 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  R6Y88_RS17900 radC 3541161..3541856 (+) 696 WP_015384272.1 DNA repair protein RadC -
  R6Y88_RS17905 mreB 3541948..3542961 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  R6Y88_RS17910 mreC 3542992..3543864 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26378.00 Da        Isoelectric Point: 9.6195

>NTDB_id=899752 R6Y88_RS17885 WP_015384274.1 3538524..3539270(+) (comC) [Bacillus subtilis strain YT-4]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHMISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=899752 R6Y88_RS17885 WP_015384274.1 3538524..3539270(+) (comC) [Bacillus subtilis strain YT-4]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATATGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGAGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98