Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   R6Y88_RS10685 Genome accession   NZ_CP137687
Coordinates   2107659..2107949 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain YT-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2102659..2112949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS10670 yabE 2102854..2104167 (-) 1314 WP_015382562.1 ubiquitin-like domain-containing protein -
  R6Y88_RS10675 dayD 2104323..2105090 (-) 768 WP_014475570.1 TatD family hydrolase -
  R6Y88_RS10680 metG 2105170..2107164 (-) 1995 WP_015382561.1 methionine--tRNA ligase -
  R6Y88_RS10685 abrB 2107659..2107949 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  R6Y88_RS10690 rsmI 2107998..2108876 (-) 879 WP_041517603.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  R6Y88_RS10695 yazA 2108851..2109150 (-) 300 WP_014475567.1 GIY-YIG nuclease family protein -
  R6Y88_RS10700 trmNF 2109137..2109880 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  R6Y88_RS10705 yabA 2109939..2110298 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  R6Y88_RS10710 ricT 2110313..2111140 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  R6Y88_RS10715 holB 2111143..2112132 (-) 990 WP_015482689.1 DNA polymerase III subunit delta' -
  R6Y88_RS10720 yaaR 2112144..2112584 (-) 441 WP_015382556.1 YaaR family protein -
  R6Y88_RS10725 darA 2112597..2112926 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=899728 R6Y88_RS10685 WP_003226760.1 2107659..2107949(+) (abrB) [Bacillus subtilis strain YT-4]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=899728 R6Y88_RS10685 WP_003226760.1 2107659..2107949(+) (abrB) [Bacillus subtilis strain YT-4]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1