Detailed information NTG0089972

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LDO37_RS17060
• Genome accession: NZ_AP025144
• Coordinates: 3813237..3814241 (+)
• Length: 334 a.a.
• NCBI ID: WP_101114022.1
• Uniprot ID: A0AAV5NX12
• Organism: Vibrio penaeicida strain IFO 15640T
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3808237..3819241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO37_RS17040	metJ	3808310..3808630 (+)	321	WP_101114045.1	met regulon transcriptional regulator MetJ	-
LDO37_RS17045	-	3808737..3809999 (-)	1263	WP_126609356.1	malic enzyme-like NAD(P)-binding protein	-
LDO37_RS17050	rpmE	3810267..3810482 (-)	216	WP_101114026.1	50S ribosomal protein L31	-
LDO37_RS17055	priA	3810785..3812986 (+)	2202	WP_126609355.1	primosomal protein N'	-
LDO37_RS17060	cytR	3813237..3814241 (+)	1005	WP_101114022.1	DNA-binding transcriptional regulator CytR	Regulator
LDO37_RS17065	-	3814352..3814888 (+)	537	WP_126609354.1	SPOR domain-containing protein	-
LDO37_RS17070	hslV	3814999..3815535 (+)	537	WP_101114019.1	ATP-dependent protease subunit HslV	-
LDO37_RS17075	hslU	3815549..3816880 (+)	1332	WP_126609353.1	HslU--HslV peptidase ATPase subunit	-
LDO37_RS17080	-	3816993..3817910 (+)	918	WP_126609352.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LDO37_RS17085	rraA	3817988..3818512 (+)	525	WP_126609351.1	ribonuclease E activity regulator RraA	-
LDO37_RS17090	zapB	3818699..3818941 (-)	243	WP_101114015.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36485.94 Da
• Isoelectric Point: 6.6049

>NTDB_id=89972 LDO37_RS17060 WP_101114022.1 3813237..3814241(+) (cytR) [Vibrio penaeicida strain IFO 15640T]
MATMKDVAQLAGVSTATVSRALMNPEKVSSTTRKRVESAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDSYFTEIIRG
IEDVAVENGYLVLLGDSGQQKKRESSLVNLVFTKQADGMLLLGTHLPFDVSKPEQKNLPPLVMACEFAPELELPTVHIDN
LTSSFEAVNYLTQMGHSKIAQISGPDDAALCQFRNQGYQQALRRAGITMNPTYKEMGDFTFESGHKAVTKLLSLPEPPTA
VFCHNDAMAIGAIKGAKAAGLKVPQDLSVVGFDDIQFAEFCDPPLTTITQPRYEIGRQAMLMLLEILKGRDVHAGSRLLE
THLKIRESAAPPRT

Nucleotide

• Length: 1005 bp

>NTDB_id=89972 LDO37_RS17060 WP_101114022.1 3813237..3814241(+) (cytR) [Vibrio penaeicida strain IFO 15640T]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGAGTTTCTACTGCAACCGTATCACGAGCTCTGATGAACCCTGAGAA
GGTTTCATCTACTACGCGTAAACGTGTAGAGAGCGCCGTTTTGGAAGCTGGTTATTCACCGAATTCACTGGCAAGAAACT
TACGACGTAATGAATCCAAAACCATCGTTGCAATTGTACCTGACATCTGTGACTCCTATTTCACTGAGATCATTCGTGGC
ATTGAAGATGTAGCTGTGGAAAATGGATATCTCGTACTGTTGGGGGACAGCGGTCAGCAAAAGAAACGAGAAAGCTCGTT
GGTCAACTTGGTTTTCACTAAACAAGCCGATGGCATGTTGCTTTTGGGTACGCACTTGCCATTCGATGTCAGCAAACCGG
AACAAAAAAACCTGCCACCACTGGTGATGGCTTGTGAATTTGCACCGGAACTGGAATTGCCGACAGTCCATATTGATAAC
CTAACATCTTCTTTCGAGGCGGTGAACTATTTGACGCAAATGGGCCACTCCAAGATTGCTCAGATTTCAGGGCCAGACGA
TGCTGCGCTTTGCCAGTTTAGAAACCAAGGGTATCAGCAAGCGCTGAGAAGAGCTGGCATAACGATGAACCCCACTTATA
AAGAGATGGGAGATTTCACCTTTGAGTCTGGTCACAAGGCAGTCACCAAATTGCTTTCGTTACCAGAGCCACCAACCGCT
GTTTTCTGTCATAACGACGCCATGGCAATTGGAGCAATCAAAGGAGCAAAAGCCGCAGGATTAAAAGTACCTCAAGATTT
ATCCGTTGTAGGCTTCGATGATATTCAGTTTGCTGAATTCTGCGACCCTCCACTAACGACCATCACGCAGCCACGCTATG
AAATCGGTCGACAAGCCATGCTGATGCTGCTTGAAATCTTGAAAGGTCGTGACGTTCACGCAGGTTCACGCCTGTTGGAA
ACACACTTGAAAATCCGAGAAAGCGCCGCTCCACCAAGAACTTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	86.145	99.401	0.856
cytR	Vibrio parahaemolyticus RIMD 2210633	83.784	99.701	0.835