Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ABC807_RS08240 Genome accession   NZ_CP156625
Coordinates   1583315..1583581 (-) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TL7/1993     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578315..1588581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC807_RS08230 (ABC807_08230) metF 1579875..1580741 (-) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  ABC807_RS08235 (ABC807_08235) metE 1580805..1583054 (-) 2250 WP_000108220.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  ABC807_RS08240 (ABC807_08240) HI0659 1583315..1583581 (-) 267 WP_001814186.1 helix-turn-helix transcriptional regulator Machinery gene
  ABC807_RS08245 (ABC807_08245) - 1583707..1584153 (-) 447 Protein_1582 IS30 family transposase -
  ABC807_RS08250 (ABC807_08250) - 1584309..1585310 (+) 1002 WP_000597976.1 endonuclease/exonuclease/phosphatase family protein -
  ABC807_RS08255 (ABC807_08255) pheT 1585378..1587783 (-) 2406 WP_000961594.1 phenylalanine--tRNA ligase subunit beta -
  ABC807_RS08260 (ABC807_08260) - 1587860..1588369 (-) 510 WP_000619941.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=899717 ABC807_RS08240 WP_001814186.1 1583315..1583581(-) (HI0659) [Streptococcus pneumoniae strain TL7/1993]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=899717 ABC807_RS08240 WP_001814186.1 1583315..1583581(-) (HI0659) [Streptococcus pneumoniae strain TL7/1993]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489