Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   R6Y88_RS06350 Genome accession   NZ_CP137687
Coordinates   1256742..1257533 (-) Length   263 a.a.
NCBI ID   WP_015383146.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251742..1262533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS06315 ephM 1252578..1253438 (-) 861 WP_015383151.1 epoxide hydrolase EphM -
  R6Y88_RS06320 spdL 1253425..1253757 (-) 333 WP_041517766.1 SdpC immunity protein SpdL -
  R6Y88_RS06325 yfhK 1253842..1254360 (-) 519 WP_015252515.1 SH3 domain-containing protein -
  R6Y88_RS06330 yfhJ 1254505..1254774 (-) 270 WP_003243789.1 YfhJ family protein -
  R6Y88_RS06335 sspK 1254899..1255051 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  R6Y88_RS06340 yfhI 1255083..1256276 (-) 1194 WP_015482975.1 MFS transporter -
  R6Y88_RS06345 yfhH 1256419..1256733 (-) 315 WP_015383147.1 YfhH family protein -
  R6Y88_RS06350 recX 1256742..1257533 (-) 792 WP_015383146.1 recombination regulator RecX Regulator
  R6Y88_RS06355 yfhF 1257622..1258533 (+) 912 WP_038428645.1 TIGR01777 family oxidoreductase -
  R6Y88_RS06360 yfhE 1258588..1258698 (+) 111 WP_003223230.1 YfhE family protein -
  R6Y88_RS06365 yfhD 1258765..1258956 (+) 192 WP_003233561.1 YfhD family protein -
  R6Y88_RS06370 yfhC 1258995..1259579 (-) 585 WP_015482973.1 nitroreductase -
  R6Y88_RS06375 yfhB 1259667..1260548 (-) 882 WP_015383143.1 PhzF family phenazine biosynthesis isomerase -
  R6Y88_RS06380 sxzA 1260663..1261694 (-) 1032 WP_003243057.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30898.10 Da        Isoelectric Point: 6.6690

>NTDB_id=899717 R6Y88_RS06350 WP_015383146.1 1256742..1257533(-) (recX) [Bacillus subtilis strain YT-4]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EEHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=899717 R6Y88_RS06350 WP_015383146.1 1256742..1257533(-) (recX) [Bacillus subtilis strain YT-4]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGAGCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGGGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACGAGGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTACGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGTAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.24

100

0.992