Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   R6Y88_RS05270 Genome accession   NZ_CP137687
Coordinates   1065096..1065674 (-) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060096..1070674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS05235 lepB 1060100..1060606 (-) 507 WP_003233128.1 signal peptidase I -
  R6Y88_RS05240 yhjE 1060608..1061231 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  R6Y88_RS05245 - 1061383..1061754 (+) 372 WP_015383278.1 hypothetical protein -
  R6Y88_RS05250 yhjC 1061953..1062153 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  R6Y88_RS05255 yhjB 1062150..1063619 (+) 1470 WP_015383277.1 sodium:solute symporter -
  R6Y88_RS05260 yhjA 1063663..1063932 (-) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  R6Y88_RS05265 yhxD 1064150..1065049 (+) 900 WP_015483051.1 SDR family oxidoreductase -
  R6Y88_RS05270 comK 1065096..1065674 (-) 579 WP_015483050.1 competence transcription factor ComK Regulator
  R6Y88_RS05275 yhzC 1065967..1066200 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  R6Y88_RS05280 yhxC 1066228..1067085 (-) 858 WP_015483049.1 SDR family oxidoreductase -
  R6Y88_RS05285 comW 1067197..1068726 (+) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  R6Y88_RS05290 hemAT 1068982..1069359 (+) 378 Protein_1054 heme-based aerotactic transducer HemAT -
  R6Y88_RS05295 - 1069366..1070163 (+) 798 WP_404840991.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=899712 R6Y88_RS05270 WP_015483050.1 1065096..1065674(-) (comK) [Bacillus subtilis strain YT-4]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=899712 R6Y88_RS05270 WP_015483050.1 1065096..1065674(-) (comK) [Bacillus subtilis strain YT-4]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99