Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LDO37_RS16955 Genome accession   NZ_AP025144
Coordinates   3783679..3784695 (-) Length   338 a.a.
NCBI ID   WP_126606772.1    Uniprot ID   A0AAV5NV36
Organism   Vibrio penaeicida strain IFO 15640T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3778679..3789695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO37_RS16930 aroK 3779566..3780084 (-) 519 WP_101114086.1 shikimate kinase AroK -
  LDO37_RS16935 pilQ 3780273..3781991 (-) 1719 WP_399481255.1 type IV pilus secretin PilQ Machinery gene
  LDO37_RS16940 pilP 3782037..3782549 (-) 513 WP_101114082.1 pilus assembly protein PilP Machinery gene
  LDO37_RS16945 pilO 3782542..3783129 (-) 588 WP_101114080.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO37_RS16950 pilN 3783126..3783686 (-) 561 WP_126606771.1 PilN domain-containing protein Machinery gene
  LDO37_RS16955 pilM 3783679..3784695 (-) 1017 WP_126606772.1 type IV pilus assembly protein PilM Machinery gene
  LDO37_RS16960 - 3784840..3787335 (+) 2496 WP_126606773.1 penicillin-binding protein 1A -
  LDO37_RS16965 oxyR 3787427..3788308 (-) 882 WP_101114073.1 DNA-binding transcriptional regulator OxyR -
  LDO37_RS16970 - 3788488..3789219 (+) 732 WP_126606774.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37195.52 Da        Isoelectric Point: 6.8371

>NTDB_id=89971 LDO37_RS16955 WP_126606772.1 3783679..3784695(-) (pilM) [Vibrio penaeicida strain IFO 15640T]
MGRSLVIGIDFGHHSIKAVAMKPIGELMQLVGYNELNVPEDIFSENHTLDYQKIVKKLKELKKGLPLFSHQVAVSVPDKA
VISKVLQIEQDMDGREQEFAVHQAFGQQSPIPLEELSLDFIEVDQKVTTRSSTSTFQVYATRKEVVDSRVTALTKAGFKP
LTIDVHANSLLKVWRLASQVHPDRRQWMLVDIGLNQTSLCTVAAGRTPFYKEIPFGTQNVAQSQAMSDAMTLSSDSVTQS
FVKDLGEKLQRHISLYNSVNPQQNIDGIWLSGGGANLVGIADMLSKELRLETSPLNPFGLVENGTKQSVKQLSDSAAYGV
AMGLAISGVEWLKGNHHA

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=89971 LDO37_RS16955 WP_126606772.1 3783679..3784695(-) (pilM) [Vibrio penaeicida strain IFO 15640T]
ATGGGTAGATCTTTAGTAATTGGCATCGATTTCGGTCATCACAGTATTAAAGCTGTCGCAATGAAGCCTATCGGCGAGCT
AATGCAATTGGTTGGTTATAATGAGCTTAATGTACCCGAAGATATTTTCTCTGAAAACCATACCCTCGATTATCAGAAGA
TTGTAAAGAAACTCAAAGAACTTAAAAAGGGCTTACCTCTTTTTAGTCATCAAGTCGCAGTTTCCGTACCCGATAAGGCT
GTTATCAGCAAAGTACTTCAAATTGAACAAGATATGGATGGGAGAGAGCAGGAGTTCGCTGTCCATCAAGCGTTTGGTCA
ACAATCACCGATCCCACTCGAAGAATTAAGCCTCGATTTTATTGAAGTGGACCAAAAAGTCACGACTCGCAGTTCGACTT
CCACTTTTCAAGTTTATGCGACACGCAAAGAGGTGGTCGACTCTCGTGTTACCGCATTAACGAAAGCCGGTTTTAAGCCT
CTGACGATTGATGTCCATGCCAATAGCTTGTTGAAAGTATGGCGTTTGGCTAGCCAAGTTCATCCTGATAGAAGGCAGTG
GATGCTGGTGGATATCGGTTTAAATCAAACATCTTTGTGTACTGTCGCAGCAGGCAGAACCCCTTTCTATAAAGAAATCC
CATTTGGTACTCAAAACGTTGCGCAGTCACAAGCAATGTCTGATGCCATGACTCTGAGTAGCGACTCCGTCACCCAGAGT
TTTGTCAAAGATCTGGGTGAAAAGCTACAAAGACACATCAGCTTATACAACTCCGTAAACCCCCAACAAAACATTGATGG
CATTTGGTTGAGCGGCGGCGGGGCTAATTTGGTGGGTATTGCTGACATGCTTAGTAAAGAACTTCGGCTCGAAACCTCGC
CACTAAATCCGTTTGGGTTAGTTGAAAATGGCACTAAGCAGTCGGTTAAGCAATTGTCGGATTCTGCCGCTTATGGCGTG
GCAATGGGGTTGGCGATTAGCGGTGTTGAGTGGTTAAAAGGAAATCACCATGCATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

54.118

100

0.544
  pilM Vibrio campbellii strain DS40M4

44.048

99.408

0.438

Multiple sequence alignment