Detailed information NTG0089968

Bioinformatically predicted

Overview

• Name: pilP
• Type: Machinery gene
• Locus tag: LDO37_RS16940
• Genome accession: NZ_AP025144
• Coordinates: 3782037..3782549 (-)
• Length: 170 a.a.
• NCBI ID: WP_101114082.1
• Uniprot ID: A0AAV5NW88
• Organism: Vibrio penaeicida strain IFO 15640T
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3777037..3787549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO37_RS16925	aroB	3778455..3779543 (-)	1089	WP_104400116.1	3-dehydroquinate synthase	-
LDO37_RS16930	aroK	3779566..3780084 (-)	519	WP_101114086.1	shikimate kinase AroK	-
LDO37_RS16935	pilQ	3780273..3781991 (-)	1719	WP_399481255.1	type IV pilus secretin PilQ	Machinery gene
LDO37_RS16940	pilP	3782037..3782549 (-)	513	WP_101114082.1	pilus assembly protein PilP	Machinery gene
LDO37_RS16945	pilO	3782542..3783129 (-)	588	WP_101114080.1	type 4a pilus biogenesis protein PilO	Machinery gene
LDO37_RS16950	pilN	3783126..3783686 (-)	561	WP_126606771.1	PilN domain-containing protein	Machinery gene
LDO37_RS16955	pilM	3783679..3784695 (-)	1017	WP_126606772.1	type IV pilus assembly protein PilM	Machinery gene
LDO37_RS16960	-	3784840..3787335 (+)	2496	WP_126606773.1	penicillin-binding protein 1A	-

Sequence

Protein

• Length: 170 a.a.
• Molecular weight: 18570.84 Da
• Isoelectric Point: 10.7318

>NTDB_id=89968 LDO37_RS16940 WP_101114082.1 3782037..3782549(-) (pilP) [Vibrio penaeicida strain IFO 15640T]
MNKPLMALVAIAALSGCRANHEPLQDFILKTQANASTQVSKLQAEQSFKASEYVPVTARVPFALPKIAVVETQPSLVKDC
WQPASRRKNGKLERFALTQLKLKGVMGSGKKVSGIIQVPDGHVVKVKQGHYLGLNNGKVINITPKHLTIQETLPDGLGCW
QQRNVKLALK

Nucleotide

• Length: 513 bp

>NTDB_id=89968 LDO37_RS16940 WP_101114082.1 3782037..3782549(-) (pilP) [Vibrio penaeicida strain IFO 15640T]
ATGAATAAGCCGCTGATGGCACTGGTCGCAATTGCAGCTTTAAGCGGTTGTCGTGCCAACCACGAACCGCTTCAGGACTT
TATTTTAAAGACACAAGCCAACGCGTCTACGCAAGTATCCAAGCTTCAAGCAGAGCAGTCGTTTAAGGCCAGTGAATATG
TGCCAGTAACGGCACGTGTTCCTTTTGCTTTACCCAAAATTGCGGTTGTTGAAACCCAACCATCTTTGGTTAAAGACTGT
TGGCAACCAGCCTCCCGAAGGAAGAATGGGAAATTAGAAAGGTTTGCTCTCACTCAACTCAAGTTAAAAGGGGTCATGGG
AAGCGGCAAAAAGGTGTCGGGCATTATTCAAGTCCCTGATGGTCATGTCGTCAAGGTAAAGCAGGGACATTACCTTGGTT
TAAACAATGGCAAGGTAATCAACATTACTCCAAAGCACCTGACGATTCAGGAAACACTACCTGATGGGCTTGGGTGTTGG
CAGCAGCGTAACGTGAAGCTCGCATTGAAATAA

Domains

Predicted by InterproScan.

• Pilus assembly protein, PilP (PilP) (24-169)

• Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1) (1-17)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilP	Vibrio campbellii strain DS40M4	53.846	99.412	0.535
pilP	Vibrio cholerae strain A1552	51.765	100	0.518