Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   R6Y88_RS03335 Genome accession   NZ_CP137687
Coordinates   710576..711040 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain YT-4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 705576..716040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS03315 fadH 706764..707528 (-) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -
  R6Y88_RS03320 ppeE 707671..708531 (+) 861 WP_015483175.1 metallophosphoesterase -
  R6Y88_RS03325 ltdD 708588..709082 (+) 495 WP_080030726.1 L,D-transpeptidase family protein -
  R6Y88_RS03330 ykuC 709158..710450 (+) 1293 WP_014479656.1 MFS transporter -
  R6Y88_RS03335 kre 710576..711040 (+) 465 WP_003232406.1 YkyB family protein Regulator
  R6Y88_RS03340 cheV 711084..711995 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  R6Y88_RS03345 - 712199..712360 (+) 162 WP_003245246.1 hypothetical protein -
  R6Y88_RS03350 dapX 712562..713743 (+) 1182 WP_015252196.1 aminotransferase A -
  R6Y88_RS03355 kinA 713753..715573 (-) 1821 WP_015483173.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=899700 R6Y88_RS03335 WP_003232406.1 710576..711040(+) (kre) [Bacillus subtilis strain YT-4]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=899700 R6Y88_RS03335 WP_003232406.1 710576..711040(+) (kre) [Bacillus subtilis strain YT-4]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1