Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   R6Y88_RS03235 Genome accession   NZ_CP137687
Coordinates   694580..695155 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 689580..700155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS03210 mobB 689976..690497 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  R6Y88_RS03215 glp 690458..691750 (-) 1293 WP_015383547.1 gephyrin-like molybdotransferase Glp -
  R6Y88_RS03220 moeB 691768..692787 (-) 1020 WP_015383546.1 molybdopterin-synthase adenylyltransferase MoeB -
  R6Y88_RS03225 mobA 692838..693437 (-) 600 WP_015383545.1 molybdenum cofactor guanylyltransferase -
  R6Y88_RS03230 cse15 693574..694539 (+) 966 WP_015383544.1 spore protein Cse15 -
  R6Y88_RS03235 rok 694580..695155 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  R6Y88_RS03240 ykuV 695621..696067 (-) 447 WP_015483177.1 thiol-disulfide oxidoreductase YkuV -
  R6Y88_RS03245 ahpA 696137..696679 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  R6Y88_RS03250 mscT 696916..697719 (+) 804 WP_041517839.1 small-conductance mechanosensitive channel protein MscT -
  R6Y88_RS03255 ykuS 697756..698001 (-) 246 WP_003232382.1 YkuS family protein -
  R6Y88_RS03260 dapI 698063..699187 (-) 1125 WP_015383541.1 N-acetyldiaminopimelate deacetylase -
  R6Y88_RS03265 dapD 699257..699967 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=899699 R6Y88_RS03235 WP_003232378.1 694580..695155(-) (rok) [Bacillus subtilis strain YT-4]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=899699 R6Y88_RS03235 WP_003232378.1 694580..695155(-) (rok) [Bacillus subtilis strain YT-4]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1