Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   R6Y88_RS03115 Genome accession   NZ_CP137687
Coordinates   670801..671079 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain YT-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 665801..676079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS03095 ade 665865..667598 (-) 1734 WP_015383561.1 adenine deaminase -
  R6Y88_RS03100 ktrC 667754..668419 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  R6Y88_RS03105 ykqA 668482..669309 (-) 828 WP_015483181.1 gamma-glutamylcyclotransferase -
  R6Y88_RS03110 kinC 669325..670611 (-) 1287 WP_015383559.1 two-component sensor histidine kinase KinC -
  R6Y88_RS03115 abrB 670801..671079 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  R6Y88_RS03120 mreBH 671363..672370 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  R6Y88_RS03125 ykpC 672471..672605 (+) 135 WP_003238865.1 protein YkpC -
  R6Y88_RS03130 ampS 672715..673947 (+) 1233 WP_015383558.1 aminopeptidase -
  R6Y88_RS03135 panEB 673981..674892 (-) 912 Protein_624 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=899698 R6Y88_RS03115 WP_003244728.1 670801..671079(-) (abrB) [Bacillus subtilis strain YT-4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=899698 R6Y88_RS03115 WP_003244728.1 670801..671079(-) (abrB) [Bacillus subtilis strain YT-4]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576