Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R4Z09_RS24700 Genome accession   NZ_CP137640
Coordinates   4923576..4924526 (-) Length   316 a.a.
NCBI ID   WP_338449349.1    Uniprot ID   -
Organism   Niallia oryzisoli strain DSM 29761     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4918576..4929526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z09_RS24675 (R4Z09_24675) - 4918742..4919551 (-) 810 WP_338449344.1 TerC family protein -
  R4Z09_RS24680 (R4Z09_24680) - 4920069..4920596 (+) 528 WP_338449345.1 QueT transporter family protein -
  R4Z09_RS24685 (R4Z09_24685) - 4920739..4921713 (-) 975 WP_338449346.1 siderophore ABC transporter substrate-binding protein -
  R4Z09_RS24690 (R4Z09_24690) - 4921863..4922621 (-) 759 WP_338449347.1 ABC transporter ATP-binding protein -
  R4Z09_RS24695 (R4Z09_24695) - 4922639..4923583 (-) 945 WP_338449348.1 iron chelate uptake ABC transporter family permease subunit -
  R4Z09_RS24700 (R4Z09_24700) ceuB 4923576..4924526 (-) 951 WP_338449349.1 ABC transporter permease Machinery gene
  R4Z09_RS24705 (R4Z09_24705) - 4925032..4926357 (+) 1326 WP_338453348.1 arsenic transporter -
  R4Z09_RS24710 (R4Z09_24710) - 4926470..4927339 (-) 870 WP_338449350.1 hypothetical protein -
  R4Z09_RS24715 (R4Z09_24715) - 4927560..4927757 (+) 198 WP_338449351.1 IDEAL domain-containing protein -
  R4Z09_RS24720 (R4Z09_24720) - 4927941..4928402 (+) 462 WP_338449352.1 hypothetical protein -
  R4Z09_RS24725 (R4Z09_24725) - 4928419..4928724 (+) 306 WP_338449353.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34806.09 Da        Isoelectric Point: 9.7956

>NTDB_id=899673 R4Z09_RS24700 WP_338449349.1 4923576..4924526(-) (ceuB) [Niallia oryzisoli strain DSM 29761]
MKKRYLLILLILLSCISLFIGVSGISPLDIFQMNEEEAKIFFSARVPRLVSIIIAGVAMSISGLIMQQLSHNKFVSPTTA
GTEDSARFGILMAMMFIPTAGLMVKMSLAFVFALLGTFIFMKILDKVKFKDAVFIPLVGLMFGNIITSITTFFAYKNDLI
QNMTSWLQGNFSMTVKGQYELIYISIPLVVLSYLFANKFTVAGMGEEFAVNLGLKYKQVVNIGLSLVAMMSAVVILTAGM
IPFLGLIIPNIVSIYNGDHLQKNLSHTALLGAVFILVCDIFGRLVIYPYEIPIGLTVGVIGSAIFIYLLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=899673 R4Z09_RS24700 WP_338449349.1 4923576..4924526(-) (ceuB) [Niallia oryzisoli strain DSM 29761]
ATGAAGAAAAGATACCTACTCATATTGCTTATCCTTTTATCATGTATATCGCTGTTTATTGGTGTATCCGGTATTTCACC
ACTAGACATCTTCCAAATGAATGAAGAAGAAGCCAAAATTTTCTTCTCAGCGAGAGTCCCGCGTCTTGTCAGCATTATTA
TCGCGGGTGTAGCGATGAGCATCAGCGGTTTAATCATGCAGCAGCTAAGCCATAACAAATTTGTTTCGCCGACAACGGCA
GGTACAGAGGATTCGGCCCGCTTTGGCATTCTGATGGCGATGATGTTTATTCCAACAGCCGGATTAATGGTTAAAATGAG
TTTGGCATTCGTCTTTGCCTTACTGGGAACGTTCATTTTTATGAAAATACTAGATAAGGTAAAATTTAAGGATGCCGTAT
TTATTCCGTTAGTAGGTTTAATGTTTGGGAATATTATAACTTCTATCACAACATTTTTTGCTTATAAAAATGATTTAATC
CAGAACATGACCTCTTGGCTGCAAGGGAATTTTTCCATGACAGTGAAAGGACAGTATGAACTTATTTACATCAGTATCCC
GCTTGTTGTGCTTTCTTATCTTTTTGCTAATAAGTTTACCGTTGCCGGTATGGGCGAGGAATTTGCTGTCAATCTCGGCC
TTAAATATAAGCAGGTTGTCAATATCGGTTTAAGTTTGGTGGCCATGATGTCAGCTGTGGTAATCTTAACAGCGGGAATG
ATTCCATTTCTAGGGTTAATTATTCCGAATATCGTTTCTATATATAATGGGGATCATCTGCAAAAGAATCTTTCCCATAC
TGCATTACTTGGTGCTGTGTTTATTTTAGTTTGTGATATTTTCGGACGCTTGGTTATTTATCCATATGAGATTCCAATTG
GTTTAACCGTAGGTGTCATTGGAAGCGCAATATTTATCTACTTACTTTTGAGGAGAAAGGCTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535