Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   R4Z09_RS23000 Genome accession   NZ_CP137640
Coordinates   4597559..4598479 (-) Length   306 a.a.
NCBI ID   WP_338453336.1    Uniprot ID   -
Organism   Niallia oryzisoli strain DSM 29761     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4592559..4603479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z09_RS22975 (R4Z09_22970) - 4592992..4593741 (-) 750 WP_338449049.1 YjbA family protein -
  R4Z09_RS22980 (R4Z09_22975) - 4593854..4594618 (-) 765 WP_338449050.1 DUF2268 domain-containing protein -
  R4Z09_RS22985 (R4Z09_22980) fabF 4594750..4595991 (-) 1242 WP_338449051.1 beta-ketoacyl-ACP synthase II -
  R4Z09_RS22990 (R4Z09_22985) - 4596047..4596979 (-) 933 WP_338449052.1 beta-ketoacyl-ACP synthase III -
  R4Z09_RS22995 (R4Z09_22990) - 4597206..4597514 (+) 309 WP_338449053.1 hypothetical protein -
  R4Z09_RS23000 (R4Z09_22995) med 4597559..4598479 (-) 921 WP_338453336.1 BMP family ABC transporter substrate-binding protein Regulator
  R4Z09_RS23005 (R4Z09_23000) - 4598600..4599385 (-) 786 WP_338449054.1 hypothetical protein -
  R4Z09_RS23010 (R4Z09_23005) - 4599514..4600254 (-) 741 WP_338449055.1 hydrolase -
  R4Z09_RS23015 (R4Z09_23010) - 4600514..4600705 (+) 192 WP_338449056.1 YjzD family protein -
  R4Z09_RS23020 (R4Z09_23015) clpB 4600799..4603396 (-) 2598 WP_338449057.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34385.87 Da        Isoelectric Point: 4.8527

>NTDB_id=899667 R4Z09_RS23000 WP_338453336.1 4597559..4598479(-) (med) [Niallia oryzisoli strain DSM 29761]
MVVVLASCGQAGNQDELKKVGLLIPDSINDQAWGTKGYKGLLKIQSRFQVDVYYKEGMNSKNVVERAIKEFAQKGVNLIY
GHGHEYDEYFADIAPKYPKIHFITFNGDAKNKNVTSLIFDSYASGFFAGMVAGHVTKTNRIGVIPAYEWQPEVKGFSEGV
KYQNKNALVDIQYVNDFDDQEKAMLIADAMMTNHCDILYPVGDSYSVPVIERVKEMGLYAIGYVSDQSDLGNKTVLTSTI
QDVDQLYEITAEKFNNGQLKPGNITYDFQNDVISLGTFSPLLDQKFIEELNRSIERYKETGKLPNE

Nucleotide


Download         Length: 921 bp        

>NTDB_id=899667 R4Z09_RS23000 WP_338453336.1 4597559..4598479(-) (med) [Niallia oryzisoli strain DSM 29761]
ATGGTAGTTGTATTAGCTTCGTGTGGACAAGCTGGAAATCAAGATGAGCTGAAAAAAGTGGGTCTATTAATACCTGATAG
TATTAATGATCAAGCATGGGGCACAAAGGGGTACAAAGGTTTGCTGAAAATTCAATCCCGTTTTCAAGTTGACGTTTATT
ATAAGGAAGGGATGAATTCCAAGAATGTCGTCGAAAGAGCCATAAAGGAATTTGCTCAAAAAGGCGTCAATTTAATATAT
GGGCACGGCCATGAATATGATGAATACTTCGCAGACATAGCTCCAAAATACCCAAAGATACATTTTATCACGTTTAACGG
TGACGCCAAAAACAAAAATGTAACAAGTTTGATCTTTGATTCGTATGCGAGTGGTTTTTTTGCTGGCATGGTTGCTGGTC
ATGTGACAAAAACGAATCGTATTGGCGTAATTCCAGCTTATGAATGGCAGCCGGAAGTAAAGGGTTTTTCTGAAGGGGTT
AAATATCAAAACAAAAATGCTCTAGTCGATATCCAGTATGTAAATGATTTTGATGATCAAGAAAAGGCTATGCTGATAGC
CGATGCGATGATGACAAATCATTGTGATATTCTATATCCTGTCGGTGACAGCTATAGTGTTCCTGTAATTGAAAGAGTAA
AGGAAATGGGACTCTATGCCATTGGCTATGTTTCCGATCAATCAGATTTAGGGAATAAGACGGTGCTTACAAGTACCATT
CAAGATGTCGATCAGTTATACGAGATCACGGCAGAAAAATTTAATAATGGGCAACTGAAGCCTGGGAATATAACCTATGA
CTTTCAAAATGATGTCATTTCACTTGGAACATTCAGTCCATTATTAGATCAGAAATTTATTGAAGAATTAAATCGCTCCA
TTGAGAGATATAAAGAAACAGGGAAACTTCCCAATGAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(18-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

50.329

99.346

0.5