Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   R4Z10_RS15750 Genome accession   NZ_CP137636
Coordinates   3087617..3088684 (-) Length   355 a.a.
NCBI ID   WP_338470240.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3082617..3093684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS15710 (R4Z10_15705) - 3083316..3084098 (+) 783 WP_338470232.1 YqhG family protein -
  R4Z10_RS15715 (R4Z10_15710) - 3084321..3084530 (-) 210 WP_338470233.1 YqzE family protein -
  R4Z10_RS15720 (R4Z10_15715) comGG 3084616..3084927 (-) 312 WP_338470234.1 competence type IV pilus minor pilin ComGG -
  R4Z10_RS15725 (R4Z10_15720) comGF 3085003..3085470 (-) 468 WP_338470235.1 competence type IV pilus minor pilin ComGF -
  R4Z10_RS15730 (R4Z10_15725) - 3085421..3085753 (-) 333 WP_338470236.1 hypothetical protein -
  R4Z10_RS15735 (R4Z10_15730) comGD 3085740..3086189 (-) 450 WP_338470237.1 competence type IV pilus minor pilin ComGD -
  R4Z10_RS15740 (R4Z10_15735) comGC 3086186..3086485 (-) 300 WP_338470238.1 competence type IV pilus major pilin ComGC -
  R4Z10_RS15745 (R4Z10_15740) comGB 3086599..3087627 (-) 1029 WP_338470239.1 competence type IV pilus assembly protein ComGB -
  R4Z10_RS15750 (R4Z10_15745) comGA 3087617..3088684 (-) 1068 WP_338470240.1 competence type IV pilus ATPase ComGA Machinery gene
  R4Z10_RS15755 (R4Z10_15750) - 3088954..3089661 (+) 708 WP_338470241.1 helix-turn-helix domain-containing protein -
  R4Z10_RS15760 (R4Z10_15755) - 3089842..3090087 (+) 246 WP_338470242.1 DUF2626 domain-containing protein -
  R4Z10_RS15765 (R4Z10_15760) - 3090142..3091158 (-) 1017 WP_338470243.1 SAM-dependent methyltransferase -
  R4Z10_RS15770 (R4Z10_15765) - 3091378..3092010 (-) 633 WP_338470244.1 MBL fold metallo-hydrolase -
  R4Z10_RS15775 (R4Z10_15770) - 3092228..3092401 (+) 174 WP_338470245.1 DUF2759 domain-containing protein -
  R4Z10_RS15780 (R4Z10_15775) - 3092449..3093636 (-) 1188 WP_338470246.1 M14 family metallopeptidase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39585.87 Da        Isoelectric Point: 8.3731

>NTDB_id=899622 R4Z10_RS15750 WP_338470240.1 3087617..3088684(-) (comGA) [Niallia sp. XMNu-256]
MSSIESLADKIITDAVRSCATDVHIIPRRNDTLVQLRISNKLVPKLHLPKEECDRLVSHFKFTASMDIGERRRPQSGSCS
YVIDGKMVGLRLSTLPAAQSESLVIRLLPLHEHIPIYQISLFPSMTRKLLALLKHSHGLIVLTGPTGSGKTSTLYSLLNE
TSHLYNRNVITLEDPIEKENELVLQVQVNEKAGITYTTGLKAILRHDPDIIMVGEIRDAETAKIAIRAALTGHLVLTTMH
TRDAKGAIYRLVEFGVNWQEIQQTLVAITAQRLVELTCPYCSGECSPYCLSYGKAKRSSVFELLSGKSLSSALGEVKGEK
LISPHQTLRDVIRKGIALGYIKEDEYDRWVFTDEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=899622 R4Z10_RS15750 WP_338470240.1 3087617..3088684(-) (comGA) [Niallia sp. XMNu-256]
TTGAGTTCAATTGAAAGCCTCGCTGATAAAATCATCACAGATGCAGTCAGAAGTTGCGCCACTGATGTCCACATTATCCC
ACGTCGAAATGATACTCTCGTACAACTTAGAATCTCTAACAAATTAGTTCCAAAGCTGCATTTGCCAAAAGAAGAATGTG
ATCGTCTCGTTTCTCATTTTAAATTTACCGCTTCCATGGATATTGGTGAACGCCGGCGACCCCAAAGTGGCTCCTGCTCT
TACGTAATTGATGGAAAAATGGTAGGTCTTCGCTTATCCACGCTTCCAGCCGCACAAAGTGAAAGCCTAGTGATCCGACT
TCTCCCCCTTCATGAACACATTCCCATTTACCAAATCTCACTTTTCCCGTCTATGACTAGAAAATTATTAGCTTTATTAA
AGCATTCACATGGTTTAATTGTACTAACTGGTCCAACAGGTAGTGGAAAAACATCCACTTTGTATTCACTTCTTAATGAA
ACATCCCATTTATACAATCGAAATGTTATTACTTTAGAAGACCCGATTGAAAAAGAGAATGAACTGGTACTTCAAGTGCA
AGTAAATGAAAAGGCCGGAATAACGTACACGACTGGCTTAAAAGCTATTTTAAGACATGATCCTGATATTATTATGGTTG
GAGAGATACGTGATGCGGAAACAGCTAAAATTGCGATACGTGCTGCACTAACAGGGCATTTGGTGTTGACGACAATGCAC
ACAAGAGATGCTAAGGGGGCCATTTATCGACTTGTGGAATTTGGGGTAAATTGGCAGGAGATACAGCAGACATTAGTAGC
CATTACGGCTCAAAGACTTGTTGAGCTAACCTGTCCCTACTGTTCTGGAGAATGTTCACCCTATTGTTTAAGTTACGGTA
AAGCCAAAAGGTCCAGTGTCTTTGAATTGCTTTCTGGCAAGTCACTTTCATCGGCACTTGGTGAAGTAAAGGGAGAAAAG
TTAATCAGTCCTCATCAAACATTAAGGGATGTCATTAGAAAGGGAATTGCTTTAGGTTATATTAAAGAAGATGAGTATGA
CAGATGGGTGTTTACAGATGAAAAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.338

100

0.563