Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R4Z10_RS15555 Genome accession   NZ_CP137636
Coordinates   3055485..3057182 (-) Length   565 a.a.
NCBI ID   WP_338470208.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3050485..3062182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS15530 (R4Z10_15525) - 3051546..3051806 (+) 261 WP_338470203.1 DUF2627 domain-containing protein -
  R4Z10_RS15535 (R4Z10_15530) - 3051819..3052556 (-) 738 WP_338470204.1 glycerophosphodiester phosphodiesterase -
  R4Z10_RS15540 (R4Z10_15535) spo0A 3052844..3053644 (-) 801 WP_338470205.1 sporulation transcription factor Spo0A -
  R4Z10_RS15545 (R4Z10_15540) - 3053779..3053913 (-) 135 WP_338470206.1 hypothetical protein -
  R4Z10_RS15550 (R4Z10_15545) spoIVB 3053973..3055265 (-) 1293 WP_338470207.1 SpoIVB peptidase -
  R4Z10_RS15555 (R4Z10_15550) recN 3055485..3057182 (-) 1698 WP_338470208.1 DNA repair protein RecN Machinery gene
  R4Z10_RS15560 (R4Z10_15555) argR 3057200..3057649 (-) 450 WP_338470209.1 transcriptional regulator ArgR -
  R4Z10_RS15565 (R4Z10_15560) - 3057732..3058565 (-) 834 WP_338470210.1 TlyA family RNA methyltransferase -
  R4Z10_RS15570 (R4Z10_15565) dxs 3058571..3060463 (-) 1893 WP_338470211.1 1-deoxy-D-xylulose-5-phosphate synthase -
  R4Z10_RS15575 (R4Z10_15570) - 3060517..3061410 (-) 894 WP_338470212.1 polyprenyl synthetase family protein -
  R4Z10_RS15580 (R4Z10_15575) xseB 3061414..3061650 (-) 237 WP_338470213.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63754.82 Da        Isoelectric Point: 5.1073

>NTDB_id=899621 R4Z10_RS15555 WP_338470208.1 3055485..3057182(-) (recN) [Niallia sp. XMNu-256]
MLSELSIKNFAIIETLSISFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSDFVRHGENRAEIEGLFLLEKSTHPVISK
AQELGIDIEDEMIVLRREITKSGKSVCRINGKLVTISILREIGARLVDIHGQHEHQELMDESKHLSLLDQFGHKKISAAL
LEYRRVYDEYQQALRKLKSLTENEQQTAQRVDLYQFQLNEIEQAQLQLDEDEALLEEKKRLSNFERIYEAIQASYSALKD
EQKGLDWIGLVMGQLEDAAGLNSEYKELAESVSNSYYMLEEAASSLRGELELLEFDPERLNEIENRLNEINGLKRKYGQS
IAGILEYGAKIEEELETLLNKESHIDQLKKVLISLKKDLMIEGQELTTLRTRLADKLTNSIHRELKELYMQKTVFEVHIN
SGESHISSTGMDQVEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQEITSIIFDEVDTGVSGRVAQAIAEKIY
KVSIGSQVLCISHLPQVAAMSDTHLYIEKEILEGRTRTRVKKLNDDGKIKEIGRMISGVEITDITKEHAKELLVTAQEMK
VHESL

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=899621 R4Z10_RS15555 WP_338470208.1 3055485..3057182(-) (recN) [Niallia sp. XMNu-256]
ATGCTTAGTGAATTATCAATTAAAAATTTTGCGATCATTGAAACCCTTTCAATTTCATTTGAAAAGGGACTAACCGTATT
GACGGGTGAAACAGGAGCAGGCAAGTCCATTATTATTGATGCTATTCATTTGCTTGTCGGTGGAAGAGGGTCTTCAGATT
TTGTGCGCCATGGGGAAAATAGGGCAGAGATTGAAGGCCTTTTTTTACTTGAGAAATCGACACATCCCGTCATATCAAAA
GCGCAGGAATTAGGAATAGATATCGAAGACGAAATGATCGTCTTGCGCCGTGAAATAACGAAAAGCGGAAAAAGTGTGTG
TAGAATTAATGGAAAACTTGTGACGATTTCAATCCTTCGTGAAATTGGGGCAAGACTTGTCGACATACATGGACAACATG
AACATCAAGAACTAATGGATGAGTCTAAGCATCTTTCTCTTCTTGATCAGTTTGGACATAAGAAAATTTCAGCAGCATTA
TTGGAATATAGACGAGTTTATGATGAATATCAACAGGCATTACGTAAGTTAAAAAGTTTAACTGAAAATGAGCAACAAAC
TGCACAAAGAGTTGATTTATACCAATTTCAATTAAATGAAATTGAACAAGCGCAATTACAATTAGATGAGGATGAAGCTT
TATTAGAGGAGAAGAAGCGACTCTCTAACTTTGAGCGTATTTATGAAGCGATACAAGCTAGTTATTCAGCTCTTAAAGAT
GAACAAAAGGGTTTGGATTGGATCGGGCTAGTCATGGGGCAATTGGAGGATGCAGCAGGATTAAACTCTGAATATAAAGA
ACTGGCTGAATCTGTATCCAATAGTTATTATATGTTAGAAGAAGCAGCTTCAAGCCTTAGAGGAGAATTGGAATTATTGG
AGTTTGATCCTGAACGCTTGAATGAAATTGAAAATCGATTAAATGAAATTAATGGATTGAAGCGAAAGTATGGGCAATCG
ATTGCTGGAATTTTAGAATACGGTGCGAAAATTGAGGAAGAATTGGAAACACTACTGAATAAAGAAAGTCATATTGATCA
GTTAAAGAAAGTTTTGATATCCTTAAAAAAGGACTTAATGATTGAAGGACAAGAGTTAACAACATTACGAACTCGGTTAG
CGGATAAATTAACAAACTCAATTCATCGTGAACTAAAAGAATTATATATGCAAAAAACTGTTTTTGAAGTACATATCAAT
AGTGGTGAATCACATATTTCTAGTACAGGGATGGATCAGGTTGAATTTTATATTTCCACAAATCCTGGAGAACCATTGAA
ACCATTGTCAAAGATTGCCTCAGGAGGAGAACTTTCCCGGATTATGCTTGCATTAAAAAGTATTTTTTCCAAACATCAGG
AAATTACTTCAATTATTTTTGATGAAGTGGATACAGGAGTCAGTGGGCGAGTTGCTCAGGCAATTGCCGAAAAAATCTAT
AAGGTTTCAATTGGTTCGCAGGTCCTCTGCATTTCACATTTGCCACAAGTTGCTGCCATGTCAGATACCCATCTTTATAT
TGAAAAGGAAATCCTTGAAGGTCGTACGAGAACAAGGGTGAAAAAACTAAACGATGACGGAAAAATAAAGGAAATCGGCC
GTATGATCTCAGGTGTAGAGATAACCGATATTACAAAAGAACATGCAAAAGAATTGTTAGTAACCGCTCAAGAAATGAAA
GTACACGAATCTCTGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.391

100

0.625