Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   R4Z10_RS05360 Genome accession   NZ_CP137636
Coordinates   1059974..1061785 (+) Length   603 a.a.
NCBI ID   WP_338472176.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054974..1066785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS05345 (R4Z10_05345) mecA 1055964..1056626 (+) 663 WP_338472173.1 adaptor protein MecA -
  R4Z10_RS05350 (R4Z10_05350) cls 1056723..1058237 (+) 1515 WP_338472174.1 cardiolipin synthase -
  R4Z10_RS05355 (R4Z10_05355) - 1058511..1059707 (+) 1197 WP_338472175.1 competence protein CoiA family protein -
  R4Z10_RS05360 (R4Z10_05360) pepF 1059974..1061785 (+) 1812 WP_338472176.1 oligoendopeptidase F Regulator
  R4Z10_RS05365 (R4Z10_05365) - 1062308..1063186 (-) 879 WP_338472177.1 ClpXP adapter SpxH family protein -
  R4Z10_RS05370 (R4Z10_05370) - 1063183..1063590 (-) 408 WP_338472178.1 globin -
  R4Z10_RS05375 (R4Z10_05375) - 1063767..1064375 (-) 609 WP_338472179.1 lytic transglycosylase domain-containing protein -
  R4Z10_RS05380 (R4Z10_05380) - 1064379..1064987 (-) 609 WP_338472180.1 CYTH domain-containing protein -
  R4Z10_RS05385 (R4Z10_05385) - 1065115..1065486 (+) 372 WP_338472181.1 hypothetical protein -
  R4Z10_RS05390 (R4Z10_05390) - 1065499..1066140 (+) 642 WP_338472182.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69994.36 Da        Isoelectric Point: 4.8642

>NTDB_id=899611 R4Z10_RS05360 WP_338472176.1 1059974..1061785(+) (pepF) [Niallia sp. XMNu-256]
MTNDSNVNKLPARSEIKVEDTWRLDDIFTNDDAWEKEFQEVKSLLPRVQEFQGKLGESADTLYEALQFQDHLLERLGKLY
AYSHMRYDQDTTNSFYQALDDRMRNLYAQAASSLAYIVPELLSIDEEKLNKFLKEKEELRLYEHSLEEINLQRPHVLPAE
QEALLAEASEVFDSSENTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESPDQRVRQDAFKAVYETYGKFRNTFSST
LSGNVKKNNFNARIRKYSSAREAALSENNIPENVYDHLVSTINKHLPLLHRYVKLRKRVLGLDELHMYDLYTPLVKDVKM
EINYEEAKDILLKGLAPLGEEYISVLKEGFDNRWVDVHENKGKRSGAYSSGSYGTNPYILMNWQNNVNNLFTLAHEFGHS
VHSYYTRKTQPYPYGNYSIFVAEVASTTNESLLNDYLLNTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHMIHRKAQ
NNEALTAEALTNDYYELNKKYYGSDIIVDDEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSKGILTEGVPAVDRYINFL
KAGSSDYPIEVLKKAGVDMTSPKPVEDACKVFEEKLTELEQLL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=899611 R4Z10_RS05360 WP_338472176.1 1059974..1061785(+) (pepF) [Niallia sp. XMNu-256]
ATGACAAACGATTCAAACGTTAATAAACTTCCAGCAAGAAGTGAAATTAAAGTTGAAGATACTTGGAGACTCGATGATAT
TTTTACAAATGATGATGCTTGGGAAAAGGAATTTCAAGAAGTGAAATCATTACTTCCAAGAGTACAAGAATTTCAAGGAA
AACTTGGTGAGTCTGCGGATACTTTGTATGAGGCATTACAATTTCAAGATCATTTATTAGAAAGATTAGGAAAGTTATAC
GCTTATTCGCATATGCGTTATGATCAAGATACAACGAATTCCTTCTATCAAGCTCTGGATGATCGCATGAGAAACTTATA
TGCGCAAGCTGCAAGTAGTTTAGCTTATATCGTTCCGGAGTTGTTATCGATTGATGAGGAAAAGCTCAATAAATTCTTAA
AGGAAAAAGAGGAATTAAGGCTTTATGAACATTCCTTAGAAGAAATTAATCTACAACGGCCACATGTTCTGCCTGCTGAA
CAAGAAGCATTATTAGCTGAAGCCTCAGAAGTATTTGACTCTTCAGAAAATACATTTGGAATGTTAAATAATGCAGACCT
TGAATTTCCTTCCATTAAGGATGAAAATGGTGAAGAAGTAGAAATCACACATGGAAGGTTTATTCGGTTTCTTGAGAGTC
CTGATCAGAGAGTGCGTCAAGATGCCTTTAAAGCAGTGTATGAAACATATGGAAAGTTTCGTAATACCTTCTCTAGTACT
TTAAGTGGAAATGTAAAGAAAAACAATTTTAATGCCAGAATCCGAAAATATTCATCTGCACGAGAGGCCGCACTTTCAGA
AAATAATATTCCTGAAAATGTTTATGATCATCTTGTTAGCACGATTAATAAACATTTACCGCTCCTTCACCGTTATGTGA
AATTACGTAAAAGAGTATTAGGGCTTGATGAACTACATATGTACGATTTATATACTCCACTTGTAAAAGACGTCAAAATG
GAAATTAATTATGAAGAGGCAAAAGATATTTTATTAAAAGGCTTGGCCCCCTTAGGTGAAGAATATATCTCTGTTTTAAA
AGAAGGCTTTGATAACCGCTGGGTAGATGTTCATGAAAACAAAGGGAAACGAAGCGGTGCCTATTCATCGGGGTCCTATG
GTACAAATCCGTATATTTTAATGAATTGGCAAAATAATGTGAACAACCTATTTACATTGGCTCATGAATTTGGTCACTCT
GTTCATAGTTATTACACACGTAAAACGCAGCCTTATCCATATGGGAATTATTCAATTTTTGTTGCTGAAGTAGCGTCAAC
AACAAATGAGTCCTTATTAAATGATTATTTATTGAATACAATAGATGATGAACAGAAACGAATTTATCTACTTAATCACT
ATTTAGAAGGTTTTAGAGGCACAGTTTTCCGTCAAACGATGTTTGCCGAGTTTGAACACATGATTCATCGAAAAGCGCAA
AATAATGAAGCCTTAACAGCAGAAGCCTTAACAAATGATTATTATGAGTTAAATAAAAAGTACTATGGTTCAGATATTAT
TGTGGATGATGAAATTGGACTTGAGTGGTCTAGAATTCCTCATTTCTATTACAATTACTATGTGTATCAATATGCAACAG
GTTATAGTGCTGCCCAAGCTTTAAGCAAGGGAATCTTAACAGAAGGGGTACCTGCCGTGGATAGATATATTAATTTCTTA
AAAGCCGGCAGCTCCGATTATCCAATTGAGGTTCTGAAAAAAGCGGGAGTAGATATGACAAGTCCAAAGCCTGTTGAAGA
TGCATGTAAAGTGTTCGAAGAAAAACTAACAGAACTTGAACAATTGTTGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.069

98.01

0.481