Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R4Z10_RS03730 Genome accession   NZ_CP137636
Coordinates   757736..758686 (+) Length   316 a.a.
NCBI ID   WP_338471887.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 752736..763686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS03700 (R4Z10_03700) - 753163..753390 (+) 228 WP_338473155.1 DUF1450 domain-containing protein -
  R4Z10_RS03705 (R4Z10_03705) - 753573..754538 (+) 966 WP_338471883.1 rhodanese-related sulfurtransferase -
  R4Z10_RS03710 (R4Z10_03710) - 754893..755504 (+) 612 WP_338471884.1 superoxide dismutase -
  R4Z10_RS03715 (R4Z10_03715) - 755726..756355 (-) 630 WP_338471885.1 metalloregulator ArsR/SmtB family transcription factor -
  R4Z10_RS03720 (R4Z10_03720) - 756527..756667 (-) 141 Protein_698 DUF350 domain-containing protein -
  R4Z10_RS03725 (R4Z10_03725) - 756788..756985 (-) 198 WP_338471886.1 IDEAL domain-containing protein -
  R4Z10_RS03730 (R4Z10_03730) ceuB 757736..758686 (+) 951 WP_338471887.1 ABC transporter permease Machinery gene
  R4Z10_RS03735 (R4Z10_03735) - 758679..759623 (+) 945 WP_338471888.1 iron chelate uptake ABC transporter family permease subunit -
  R4Z10_RS03740 (R4Z10_03740) - 759641..760399 (+) 759 WP_338471889.1 ABC transporter ATP-binding protein -
  R4Z10_RS03745 (R4Z10_03745) - 760669..761625 (+) 957 WP_338471890.1 siderophore ABC transporter substrate-binding protein -
  R4Z10_RS03750 (R4Z10_03750) - 761823..762347 (-) 525 WP_338471891.1 QueT transporter family protein -
  R4Z10_RS03755 (R4Z10_03755) - 762790..763599 (+) 810 WP_338471892.1 TerC family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35008.14 Da        Isoelectric Point: 9.8381

>NTDB_id=899601 R4Z10_RS03730 WP_338471887.1 757736..758686(+) (ceuB) [Niallia sp. XMNu-256]
MKKRYLFIALIILSIISLFIGSTDISPLDLFTMTREQSMIFWSSRIPRLVSIITAGVAMSISGLIMQQLSHNKFVSPTTA
GTEDSARFGILITMMFLPAANPIIKMGLSFTFALLGTFIFMKILDKIKFKDAVFIPLVGLMFGNIINSITTFFAYKNDLI
QNMTSWLQGNFSLIVKGQYELIYISIPLVILCYLFANKFTVAGMGEEFAINLGLNYRTIVNIGLGLVAMMTSVVILTAGM
IPFLGLIIPNIVSIYAGDHLQKNLSHTALLGAVFILACDIFGRLIIYPYEIPIGLTVGVIGSAIFIYLLFRRRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=899601 R4Z10_RS03730 WP_338471887.1 757736..758686(+) (ceuB) [Niallia sp. XMNu-256]
ATGAAGAAAAGATACCTATTTATCGCACTCATTATATTATCTATTATATCGCTGTTTATTGGGTCAACAGATATTTCACC
GCTCGATCTGTTTACGATGACTAGAGAGCAATCGATGATTTTCTGGAGTAGTAGAATACCACGCCTTGTCAGCATTATTA
CTGCAGGGGTGGCCATGAGTATAAGTGGACTCATCATGCAGCAGTTAAGTCACAATAAGTTTGTCTCTCCAACAACTGCA
GGTACTGAAGACTCAGCTCGATTTGGAATTCTAATCACGATGATGTTTTTACCAGCAGCAAATCCAATAATAAAAATGGG
ATTATCGTTCACCTTTGCTTTACTAGGTACTTTTATCTTTATGAAGATTTTAGACAAGATTAAATTCAAGGATGCGGTAT
TTATACCTCTTGTAGGATTAATGTTTGGAAATATAATTAACTCCATTACTACTTTCTTTGCTTATAAAAATGATTTAATT
CAAAATATGACATCTTGGCTACAAGGTAATTTCTCACTGATTGTGAAGGGTCAATATGAACTTATTTATATCAGTATCCC
ACTTGTTATCCTTTGTTATCTATTTGCAAATAAGTTTACAGTGGCTGGCATGGGAGAAGAATTTGCGATTAATCTAGGGC
TTAATTATCGGACAATTGTCAACATCGGATTAGGACTTGTTGCAATGATGACTTCTGTTGTAATTTTAACCGCTGGAATG
ATTCCATTCTTAGGATTAATTATACCAAATATCGTCTCTATCTATGCGGGCGATCATCTACAAAAGAATTTGTCTCATAC
AGCTTTACTTGGAGCCGTTTTCATTTTGGCCTGTGATATATTTGGTCGACTAATCATTTACCCATATGAGATACCCATCG
GTTTAACAGTCGGCGTTATCGGTAGTGCCATTTTCATTTATTTATTGTTTAGGAGAAGAGCTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528