Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R4Z10_RS00515 Genome accession   NZ_CP137636
Coordinates   107459..108835 (+) Length   458 a.a.
NCBI ID   WP_338471305.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 102459..113835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS00495 (R4Z10_00495) - 102728..103189 (+) 462 WP_338471301.1 CtsR family transcriptional regulator -
  R4Z10_RS00500 (R4Z10_00500) - 103210..103758 (+) 549 WP_338471302.1 UvrB/UvrC motif-containing protein -
  R4Z10_RS00505 (R4Z10_00505) - 103760..104824 (+) 1065 WP_338471303.1 protein arginine kinase -
  R4Z10_RS00510 (R4Z10_00510) clpC 104846..107296 (+) 2451 WP_338471304.1 ATP-dependent protease ATP-binding subunit ClpC -
  R4Z10_RS00515 (R4Z10_00515) radA 107459..108835 (+) 1377 WP_338471305.1 DNA repair protein RadA Machinery gene
  R4Z10_RS00520 (R4Z10_00520) disA 108839..109912 (+) 1074 WP_338471306.1 DNA integrity scanning diadenylate cyclase DisA -
  R4Z10_RS00525 (R4Z10_00525) - 110026..111105 (+) 1080 WP_338471307.1 PIN/TRAM domain-containing protein -
  R4Z10_RS00530 (R4Z10_00530) ispD 111131..111817 (+) 687 WP_338471308.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  R4Z10_RS00535 (R4Z10_00535) ispF 111836..112312 (+) 477 WP_338471309.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49846.59 Da        Isoelectric Point: 6.9576

>NTDB_id=899595 R4Z10_RS00515 WP_338471305.1 107459..108835(+) (radA) [Niallia sp. XMNu-256]
MAKRKTKFMCQDCGYESPKWMGKCPGCGAWNKMVEEIEKPPAKRGAFLHSEATAIVAKPMSITAIDIENEARINTDSKEL
NRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSSQLANKKHSVLYISGEESLRQTKLRAERLGVTSEQLMVYSETNLEEVS
LTIETSKPEFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRILEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEMGIFEMRESGLEEVENPSEMFLEERSHGAAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFLDKPTKATDCIIGEVGLT
GEVRRVSRIEQRVQEAEKLGFERIILPANNIGGWTAPKGIQLIGVTSVKEALQVALGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=899595 R4Z10_RS00515 WP_338471305.1 107459..108835(+) (radA) [Niallia sp. XMNu-256]
ATGGCAAAAAGAAAAACAAAGTTTATGTGTCAAGATTGTGGCTATGAATCTCCAAAATGGATGGGAAAATGTCCTGGTTG
CGGCGCTTGGAATAAAATGGTCGAGGAGATTGAGAAGCCCCCTGCAAAAAGAGGTGCTTTCCTACACTCCGAGGCTACGG
CAATTGTTGCAAAACCAATGAGCATTACAGCCATTGATATTGAGAATGAGGCCAGAATTAATACCGATTCGAAAGAGTTA
AATCGGGTTCTCGGTGGAGGGATCGTAAAAGGTTCACTTGTTCTGATTGGTGGTGACCCGGGAATAGGGAAGTCCACCTT
GCTTCTGCAAGTATCCTCTCAATTAGCGAATAAAAAGCATTCTGTTCTATATATTTCAGGGGAAGAGTCATTGAGACAAA
CAAAACTTAGGGCAGAAAGGTTAGGGGTTACCTCGGAGCAGTTAATGGTTTACTCTGAGACGAATTTAGAAGAGGTTAGT
TTGACGATTGAGACGTCAAAACCTGAATTTGTGATCATCGATTCCATTCAGACGATCTTTCATCCTGAGGTCACCTCAGC
CCCAGGAAGTGTCTCTCAAGTACGTGAATGTACAGCTGAACTTATGAGAATTGCTAAAACAAAGGGGATTGCTATTTTTA
TCGTTGGTCACGTGACAAAAGAAGGATCGATTGCGGGCCCTCGTATTTTAGAACATATGGTTGATACCGTTTTATATTTT
GAAGGTGAGCGTCATCATACATATCGCATTTTGCGTGCGGTCAAAAATCGTTTTGGATCAACAAACGAGATGGGGATATT
TGAAATGCGGGAGTCAGGCTTAGAAGAGGTGGAAAACCCATCTGAAATGTTCCTAGAAGAACGTTCTCACGGTGCAGCCG
GTTCAACTGTTGTTGCCTCAATGGAAGGAACAAGACCCGTTCTAGTGGAAATTCAGGCGCTTATCTCCCCAACAAGCTTT
GGGAATCCAAGACGGATGGCGACGGGGATTGACCATAATCGGGTGCCCCTGCTTATGGCTGTATTAGAAAAGAGAGTGGG
GATGCTTCTTCAAAATCAAGATGCATACTTAAAGGTAGCAGGCGGAGTGAAACTGGATGAACCAGCCATTGATTTAGCTG
TAGCCATTAGTATTGCCTCAAGCTTTCTTGATAAGCCGACAAAAGCAACAGACTGTATCATTGGAGAGGTTGGCTTAACA
GGTGAAGTTAGAAGGGTGTCAAGGATCGAGCAACGAGTTCAGGAAGCGGAGAAGCTTGGATTTGAACGAATTATTTTACC
TGCTAACAATATTGGTGGTTGGACAGCACCGAAAGGAATCCAATTAATTGGAGTCACCTCTGTTAAGGAAGCTTTGCAAG
TTGCATTAGGGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.304

100

0.766
  radA Streptococcus pneumoniae Rx1

64.097

99.127

0.635
  radA Streptococcus pneumoniae D39

64.097

99.127

0.635
  radA Streptococcus pneumoniae R6

64.097

99.127

0.635
  radA Streptococcus pneumoniae TIGR4

64.097

99.127

0.635
  radA Streptococcus mitis NCTC 12261

64.097

99.127

0.635
  radA Streptococcus mitis SK321

63.877

99.127

0.633