Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   R5P06_RS02185 Genome accession   NZ_CP137633
Coordinates   393259..394203 (-) Length   314 a.a.
NCBI ID   WP_318844049.1    Uniprot ID   -
Organism   Candidatus Thioglobus autotrophicus strain EF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388259..399203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5P06_RS02155 (R5P06_02155) - 388957..389238 (+) 282 WP_318844044.1 4a-hydroxytetrahydrobiopterin dehydratase -
  R5P06_RS02160 (R5P06_02160) - 389242..389919 (+) 678 WP_318844045.1 hypothetical protein -
  R5P06_RS02165 (R5P06_02165) - 389921..390910 (+) 990 WP_053951805.1 zinc-binding alcohol dehydrogenase family protein -
  R5P06_RS02170 (R5P06_02170) - 390946..391425 (-) 480 WP_318844046.1 hypothetical protein -
  R5P06_RS02175 (R5P06_02175) - 391415..392662 (-) 1248 WP_318844047.1 TolC family protein -
  R5P06_RS02180 (R5P06_02180) - 392659..393156 (-) 498 WP_318844048.1 thioredoxin fold domain-containing protein -
  R5P06_RS02185 (R5P06_02185) pilA 393259..394203 (-) 945 WP_318844049.1 signal recognition particle-docking protein FtsY Machinery gene
  R5P06_RS02190 (R5P06_02190) - 394229..395560 (+) 1332 WP_318844050.1 pitrilysin family protein -
  R5P06_RS02195 (R5P06_02195) - 395557..396846 (+) 1290 WP_318844051.1 pitrilysin family protein -
  R5P06_RS02200 (R5P06_02200) - 396885..397535 (+) 651 WP_318844052.1 rhodanese-like domain-containing protein -
  R5P06_RS02205 (R5P06_02205) - 397645..398352 (+) 708 WP_318844053.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 34023.92 Da        Isoelectric Point: 5.8702

>NTDB_id=899583 R5P06_RS02185 WP_318844049.1 393259..394203(-) (pilA) [Candidatus Thioglobus autotrophicus strain EF3]
MFNFFKKDKSDPIEKSTSLKERLAKSRQKLGSGLSSLLLGKKAIDEDLLDELETLLITADIGISTTDKVLESVRKNASRK
ILKDSDSLYQFLKDELSELLIKDSQLNTDTNETFVILVVGINGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQL
KVWGERNEIPVVAQATGSDAASVIYDAYESARAKNIDILIADTAGRLHTQGNLMQELEKIKRVLKKHNANAPHETMLVID
GGSGQNAVNQAVEFNKAVGLNGISITKLDGTAKGGVVFAIADELKLPIRFIGVGEGIDDLKPFNAKDFIDALFE

Nucleotide


Download         Length: 945 bp        

>NTDB_id=899583 R5P06_RS02185 WP_318844049.1 393259..394203(-) (pilA) [Candidatus Thioglobus autotrophicus strain EF3]
TTGTTTAATTTTTTTAAAAAAGATAAATCTGACCCAATAGAAAAATCCACCTCGCTAAAAGAGCGCCTGGCCAAATCTAG
GCAAAAATTAGGCTCGGGATTATCCAGCTTACTATTAGGTAAAAAAGCCATTGATGAGGATTTGCTAGATGAGCTGGAAA
CGCTCCTAATCACAGCAGATATTGGCATTAGCACTACAGACAAAGTGCTTGAATCGGTACGCAAAAACGCCTCACGAAAA
ATACTAAAAGACTCTGATAGTTTGTATCAATTCTTAAAAGATGAATTATCTGAATTACTGATTAAAGACAGCCAATTAAA
TACCGATACCAATGAAACATTTGTGATTTTAGTAGTGGGTATTAATGGTGCTGGCAAAACCACCACCATCGGCAAACTGG
CCAAATCTTTTCAAAACCAGGGCAAGTCTGTCATGCTCGCAGCAGGCGATACCTTTCGCGCCGCCGCCGTTGAGCAGCTA
AAAGTATGGGGTGAGCGCAACGAAATACCAGTTGTCGCCCAAGCGACTGGCTCAGACGCCGCCTCGGTGATTTACGATGC
TTATGAATCAGCACGGGCTAAAAATATTGATATTCTGATTGCCGACACCGCAGGACGCTTGCATACTCAAGGAAATCTCA
TGCAAGAGCTAGAAAAAATCAAACGTGTTTTAAAAAAGCACAACGCCAACGCGCCGCACGAAACCATGCTGGTGATTGAT
GGTGGTTCAGGGCAAAATGCAGTTAACCAAGCCGTAGAATTTAACAAGGCTGTTGGTCTTAATGGTATTAGTATTACTAA
GCTTGACGGTACGGCAAAAGGTGGTGTGGTATTTGCTATTGCTGATGAGCTTAAACTCCCTATTCGATTTATTGGTGTAG
GCGAAGGCATTGATGATCTCAAACCTTTTAATGCTAAAGATTTTATCGATGCATTATTTGAGTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(30-96)

SRP54-type protein, GTPase domain (SRP54)

(114-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.821

95.86

0.516